Factsheet for Bra026818.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59419	Canola	nucleus	99.58	99.58
CDX82805	Canola	nucleus	98.33	97.52
CDX81654	Canola	nucleus	97.92	97.11
Bra026202.1-P	Field mustard	nucleus	65.42	78.5
AT1G14600.1	Thale cress	nucleus	80.0	75.29
Bra024836.1-P	Field mustard	nucleus	62.5	57.92
Bra026618.1-P	Field mustard	nucleus	62.08	56.87
Bra018498.1-P	Field mustard	mitochondrion	16.67	56.34
Bra017425.1-P	Field mustard	nucleus	40.42	48.99
KRH49492	Soybean	nucleus	41.25	33.0
KRG89170	Soybean	nucleus	40.42	32.99
Bra029503.1-P	Field mustard	mitochondrion	19.58	27.33
VIT_01s0137g00050.t01	Wine grape	nucleus	32.5	25.74
KRG90693	Soybean	nucleus	32.08	25.41
KRH36060	Soybean	nucleus	25.83	25.41
GSMUA_Achr4P25920_001	Banana	nucleus	26.25	25.4
GSMUA_Achr11P...	Banana	nucleus	24.58	25.21
PGSC0003DMT400075668	Potato	nucleus	29.58	23.05
GSMUA_Achr2P11010_001	Banana	nucleus	27.92	22.95
Solyc04g008480.1.1	Tomato	nucleus	28.33	22.9
GSMUA_AchrUn_...	Banana	nucleus	27.92	22.71
Bra021038.1-P	Field mustard	plastid	16.67	22.35
Bra005124.1-P	Field mustard	nucleus	30.0	21.36
GSMUA_Achr5P19200_001	Banana	nucleus	25.0	20.98
Bra000180.1-P	Field mustard	nucleus	29.17	17.99
Bra004973.1-P	Field mustard	nucleus	28.75	16.95
Bra040176.1-P	Field mustard	nucleus	20.0	15.14
Bra008613.1-P	Field mustard	nucleus	17.92	14.78
Bra023254.1-P	Field mustard	nucleus	20.42	13.39
Bra033844.1-P	Field mustard	nucleus	20.42	12.5
Bra000270.1-P	Field mustard	nucleus	15.0	12.5
Bra023570.1-P	Field mustard	cytosol	20.0	12.06
Bra017021.1-P	Field mustard	nucleus	12.92	8.52
Bra035311.1-P	Field mustard	nucleus	17.92	6.89
Bra006360.1-P	Field mustard	nucleus	13.33	4.37

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra026818	EnsemblPlants:Bra026818.1	EnsemblPlants:Bra026818.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4EDF8	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002542D94	SEG:seg	:	:

Description

AT1G14600 (E=4e-080) | DNA binding / transcription factor

Coordinates

chrA09:+:33854837..33857485

Molecular Weight (calculated)

27197.6 Da

IEP (calculated)

9.155

GRAVY (calculated)

-0.762

Length

240 amino acids

Sequence
(BLAST)

001: MGRCGRSSDG GISGARPYVR SPVPRLKWTP ELHQNFVHAV DMLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGYKP TLLGRSESSS SSRRRRQDNE
101: DHFYDNLSEH ARNDCLLGFH SFNFRRGRTS ADNDDDDFLN NISMERTKTF AGIGESNKFQ SNHFLEVQRT KNIWVNEEED LTLSLSLDHP HNSQKRWRSN
201: TSSSLSETSE AVSSAFISRD CFASSKIDLN LNLSFSSSSS

Best Arabidopsis Sequence Match ( AT1G14600.1 )
(BLAST)

001: MGRCGRSNDG VIGGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV KGLTISHVKS HLQMYRGSRI TLLGKPEESS SPSSRRRRRQ
101: DNEEDHLHDN LSVHARNDCL LGFHSFNFRE QTSATDNDDD DFLNIMNMER TKTFAGNGES IKFQSHHSLE AENTKNIWKN TWRENEHEEE EELSLSLSLN
201: HPHNHQQRWK SNASSSLSET SEAVSSSSGP FIFRDCFASS KIDLNLNLSF SLLHS

Arabidopsis Description

Putative Myb family transcription factor At1g14600 [Source:UniProtKB/Swiss-Prot;Acc:Q700D9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.