Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67147 | Canola | nucleus | 92.36 | 81.35 |
| CDY42825 | Canola | nucleus | 92.01 | 81.04 |
| AT2G42660.1 | Thale cress | nucleus | 44.44 | 50.2 |
| Bra018498.1-P | Field mustard | mitochondrion | 7.99 | 32.39 |
| VIT_10s0003g01380.t01 | Wine grape | mitochondrion | 7.99 | 30.26 |
| Bra026202.1-P | Field mustard | nucleus | 12.85 | 18.5 |
| Bra005124.1-P | Field mustard | nucleus | 21.53 | 18.4 |
| PGSC0003DMT400026419 | Potato | nucleus | 19.79 | 16.38 |
| Bra029503.1-P | Field mustard | mitochondrion | 9.72 | 16.28 |
| Bra024836.1-P | Field mustard | nucleus | 14.58 | 16.22 |
| Solyc02g076670.2.1 | Tomato | nucleus | 18.75 | 15.98 |
| Bra026618.1-P | Field mustard | nucleus | 14.24 | 15.65 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 16.67 | 15.64 |
| PGSC0003DMT400011207 | Potato | nucleus | 12.85 | 15.61 |
| KRH27060 | Soybean | nucleus | 19.79 | 15.49 |
| KRH22274 | Soybean | nucleus | 19.44 | 15.18 |
| Bra026818.1-P | Field mustard | nucleus | 12.5 | 15.0 |
| Bra000180.1-P | Field mustard | nucleus | 20.14 | 14.91 |
| KRH58975 | Soybean | nucleus | 19.79 | 14.21 |
| KRH42874 | Soybean | nucleus | 19.79 | 14.18 |
| KRH11029 | Soybean | nucleus | 17.71 | 13.97 |
| Bra004973.1-P | Field mustard | nucleus | 19.44 | 13.76 |
| KRH21258 | Soybean | nucleus | 17.36 | 13.4 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 17.01 | 12.96 |
| OQU76531 | Sorghum | nucleus | 22.92 | 12.89 |
| TraesCS6A01G109700.1 | Wheat | nucleus | 20.83 | 12.58 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 20.49 | 12.42 |
| HORVU7Hr1G080530.3 | Barley | nucleus | 21.88 | 12.33 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 21.88 | 12.19 |
| Os06t0543200-01 | Rice | nucleus | 22.92 | 12.15 |
| Zm00001d037015_P001 | Maize | nucleus | 22.92 | 11.91 |
| HORVU6Hr1G019650.5 | Barley | nucleus | 19.79 | 11.88 |
| EES04827 | Sorghum | nucleus | 21.88 | 11.86 |
| Zm00001d016175_P001 | Maize | nucleus | 22.22 | 11.85 |
| TraesCS7B01G238000.1 | Wheat | nucleus | 21.53 | 11.83 |
| GSMUA_Achr10P... | Banana | nucleus | 21.18 | 11.78 |
| Bra021038.1-P | Field mustard | plastid | 7.29 | 11.73 |
| Zm00001d046174_P001 | Maize | nucleus | 21.53 | 11.68 |
| Os02t0241200-00 | Rice | nucleus | 21.53 | 11.38 |
| GSMUA_Achr7P13880_001 | Banana | nucleus | 15.97 | 11.22 |
| TraesCS7A01G345200.2 | Wheat | nucleus | 19.79 | 11.03 |
| TraesCS6B01G138200.1 | Wheat | nucleus | 20.14 | 10.98 |
| Bra040176.1-P | Field mustard | nucleus | 10.76 | 9.78 |
| Bra017021.1-P | Field mustard | nucleus | 12.15 | 9.62 |
| Bra017425.1-P | Field mustard | nucleus | 5.56 | 8.08 |
| Bra033844.1-P | Field mustard | nucleus | 10.42 | 7.65 |
| Bra023254.1-P | Field mustard | nucleus | 9.72 | 7.65 |
| Bra008613.1-P | Field mustard | nucleus | 6.94 | 6.87 |
| Bra023570.1-P | Field mustard | cytosol | 8.33 | 6.03 |
| Bra035311.1-P | Field mustard | nucleus | 11.11 | 5.13 |
| Bra006360.1-P | Field mustard | nucleus | 9.03 | 3.55 |
Protein Annotations
| EnsemblPlants:Bra000270.1 | EnsemblPlants:Bra000270.1-P | EnsemblPlantsGene:Bra000270 | Gene3D:1.10.10.60 | ncoils:Coil | PANTHER:PTHR31314 |
| PANTHER:PTHR31314:SF41 | SEG:seg | UniParc:UPI00025403C6 | UniProt:M4C7U2 | MapMan:35.2 | : |
Description
AT2G42660 (E=8e-022) | myb family transcription factor
Coordinates
chrA03:-:10270517..10272516
Molecular Weight (calculated)
32664.9 Da
IEP (calculated)
7.786
GRAVY (calculated)
-0.516
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGTSSREKC AMWLDLNREE AVEKYNEEES SVEDEDQQVT SSNNVRQYVR SNMPRLRWTP DLHLSFVRAV QRLGGPHKVG AMMGAQRNYL LDMIDIPYGG
101: LRHACYPKTV PSRVHNQGTV FTNLGANFVM RPSSWCNRLS GNELHGVRGG LNNRDSLESK TLPLLEEDDP REKSPRRSGK RSIISQTIKT NAWRWDQHDA
201: LAVSVLDIIR RVTVVMASDI VETIWVRLDS DPKLSVDKLM RETDTIRCRA DRSSVESSLG LRLGKRTCLA LEAASLIEQG FDCIFNCL
101: LRHACYPKTV PSRVHNQGTV FTNLGANFVM RPSSWCNRLS GNELHGVRGG LNNRDSLESK TLPLLEEDDP REKSPRRSGK RSIISQTIKT NAWRWDQHDA
201: LAVSVLDIIR RVTVVMASDI VETIWVRLDS DPKLSVDKLM RETDTIRCRA DRSSVESSLG LRLGKRTCLA LEAASLIEQG FDCIFNCL
001: MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM PRLRWTPDLH LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
Arabidopsis Description
At2g45350/F14N22.7 [Source:UniProtKB/TrEMBL;Acc:Q9SJJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.