Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G109700.1 | Wheat | nucleus | 86.25 | 86.79 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 85.42 | 86.32 |
| TraesCS6B01G138200.1 | Wheat | nucleus | 86.88 | 78.98 |
| Os02t0241200-00 | Rice | nucleus | 60.62 | 53.39 |
| EES04827 | Sorghum | nucleus | 48.33 | 43.69 |
| Zm00001d016175_P001 | Maize | nucleus | 48.33 | 42.96 |
| VIT_12s0028g02080.t01 | Wine grape | nucleus | 19.38 | 38.43 |
| HORVU7Hr1G107500.1 | Barley | mitochondrion | 5.83 | 37.33 |
| HORVU7Hr1G080530.3 | Barley | nucleus | 37.92 | 35.62 |
| PGSC0003DMT400011207 | Potato | nucleus | 16.25 | 32.91 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 19.58 | 30.62 |
| AT2G42660.1 | Thale cress | nucleus | 16.04 | 30.2 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 22.71 | 28.84 |
| HORVU7Hr1G107680.8 | Barley | nucleus | 15.21 | 27.97 |
| HORVU7Hr1G107670.1 | Barley | nucleus | 14.38 | 27.82 |
| Solyc02g076670.2.1 | Tomato | nucleus | 19.58 | 27.81 |
| KRH11029 | Soybean | nucleus | 20.83 | 27.4 |
| PGSC0003DMT400026419 | Potato | nucleus | 19.79 | 27.3 |
| KRH22274 | Soybean | nucleus | 20.62 | 26.83 |
| KRH27060 | Soybean | nucleus | 20.42 | 26.63 |
| CDY67147 | Canola | nucleus | 18.12 | 26.61 |
| CDY42825 | Canola | nucleus | 17.92 | 26.3 |
| KRH21258 | Soybean | nucleus | 20.42 | 26.27 |
| KRH42874 | Soybean | nucleus | 21.25 | 25.37 |
| KRH58975 | Soybean | nucleus | 20.62 | 24.69 |
| HORVU1Hr1G052170.2 | Barley | nucleus | 12.29 | 23.05 |
| HORVU7Hr1G107630.5 | Barley | mitochondrion | 12.08 | 21.4 |
| HORVU2Hr1G095530.2 | Barley | nucleus | 13.12 | 21.0 |
| HORVU6Hr1G064920.1 | Barley | mitochondrion | 9.79 | 19.92 |
| Bra000270.1-P | Field mustard | nucleus | 11.88 | 19.79 |
| HORVU7Hr1G070420.2 | Barley | nucleus | 6.88 | 19.76 |
| HORVU0Hr1G016420.1 | Barley | mitochondrion | 9.58 | 19.49 |
| HORVU6Hr1G000410.1 | Barley | nucleus | 12.92 | 18.84 |
| HORVU4Hr1G082560.1 | Barley | plastid | 14.79 | 18.59 |
| HORVU5Hr1G017410.10 | Barley | nucleus | 12.92 | 18.02 |
| HORVU4Hr1G012040.5 | Barley | nucleus | 12.5 | 16.09 |
| HORVU5Hr1G097900.4 | Barley | mitochondrion, plastid | 12.29 | 15.36 |
| HORVU5Hr1G060310.22 | Barley | nucleus | 12.29 | 13.29 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | UniProt:A0A287TIF4 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:HORVU6Hr1G019650 | EnsemblPlants:HORVU6Hr1G019650.5 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants |
| PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF20 | InterPro:SANT/Myb | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | UniParc:UPI000B47DC03 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:53647985..53650638
Molecular Weight (calculated)
52835.1 Da
IEP (calculated)
9.991
GRAVY (calculated)
-0.805
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MITREKEAIV RDVEDKQEVA EPEIVMDNRK RTMNGRKLDL NEDIDMESEQ GEVGDDNDRK EEEEDGGSTT DVAGSRSSSN NSSTNHASET QEGTGAGEHR
101: VRQYNRSKLP RLRWTPDLHM AFIRAVERLG GQEGATPKLV LQMMNVRGLS IAHVKSHLQQ MYRSKKLDHQ GQRIRGAISS VFSPMGFHSM RGDRRFHDML
201: LQRAAALSST AEHGGFFASR NGGGGGNTTS RLYGILQHHH RPSLIQSGFK NCSFRNQEWA FNHRDRITRK DVKASSTTPH FFASSSVRRW PLGSAVAGAG
301: EQMRDESFGY FTGHGSGQHS RAMPPARSVV PGGGNHRLPF RWHGSDGGKG AQATPSDPVM IAKALDSQQQ KHIEQQRALI TPADKVRLPT ETPELELSLS
401: PATAMDTTDG TPSKKRKKST AASSEQELEH CNKLSISPLS LLPPAASMPM QRKEKTRGGS AEAALGQSTL DLTMSIRALE
101: VRQYNRSKLP RLRWTPDLHM AFIRAVERLG GQEGATPKLV LQMMNVRGLS IAHVKSHLQQ MYRSKKLDHQ GQRIRGAISS VFSPMGFHSM RGDRRFHDML
201: LQRAAALSST AEHGGFFASR NGGGGGNTTS RLYGILQHHH RPSLIQSGFK NCSFRNQEWA FNHRDRITRK DVKASSTTPH FFASSSVRRW PLGSAVAGAG
301: EQMRDESFGY FTGHGSGQHS RAMPPARSVV PGGGNHRLPF RWHGSDGGKG AQATPSDPVM IAKALDSQQQ KHIEQQRALI TPADKVRLPT ETPELELSLS
401: PATAMDTTDG TPSKKRKKST AASSEQELEH CNKLSISPLS LLPPAASMPM QRKEKTRGGS AEAALGQSTL DLTMSIRALE
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.