Factsheet for Zm00001d016175_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04827	Sorghum	nucleus	82.04	83.43
TraesCS6A01G109700.1	Wheat	nucleus	43.89	49.69
TraesCS6D01G098200.1	Wheat	nucleus	42.96	48.84
HORVU6Hr1G019650.5	Barley	nucleus	42.96	48.33
Zm00001d048448_P001	Maize	nucleus	10.0	46.55
Os02t0241200-00	Rice	nucleus	46.85	46.42
TraesCS6B01G138200.1	Wheat	nucleus	44.26	45.27
VIT_12s0028g02080.t01	Wine grape	nucleus	17.59	39.26
Zm00001d046174_P001	Maize	nucleus	34.44	35.03
PGSC0003DMT400011207	Potato	nucleus	15.19	34.6
Zm00001d037015_P001	Maize	nucleus	35.0	34.12
KRH27060	Soybean	nucleus	22.41	32.88
GSMUA_Achr7P09370_001	Banana	nucleus	22.78	32.54
KRH22274	Soybean	nucleus	22.04	32.25
Solyc03g006150.2.1	Tomato	extracellular, nucleus	18.15	31.92
KRH11029	Soybean	nucleus	20.74	30.68
AT2G42660.1	Thale cress	nucleus	14.26	30.2
KRH58975	Soybean	nucleus	22.41	30.17
KRH42874	Soybean	nucleus	22.04	29.6
KRH21258	Soybean	nucleus	20.37	29.49
PGSC0003DMT400026419	Potato	nucleus	18.89	29.31
CDY67147	Canola	nucleus	17.59	29.05
CDY42825	Canola	nucleus	17.59	29.05
Solyc02g076670.2.1	Tomato	nucleus	17.96	28.7
Zm00001d046981_P001	Maize	nucleus	11.11	28.44
Zm00001d041376_P001	Maize	nucleus	7.59	26.62
Zm00001d005087_P001	Maize	nucleus	16.67	25.86
Zm00001d036638_P001	Maize	nucleus	11.85	24.06
Zm00001d030911_P001	Maize	cytosol	7.41	22.47
Bra000270.1-P	Field mustard	nucleus	11.85	22.22
Zm00001d002649_P001	Maize	nucleus	12.78	21.04
Zm00001d017563_P002	Maize	nucleus	13.33	20.81
Zm00001d026106_P001	Maize	nucleus	12.96	20.41
Zm00001d027492_P001	Maize	mitochondrion	15.0	18.66
Zm00001d049511_P001	Maize	nucleus	10.37	16.14
Zm00001d034181_P001	Maize	plastid	11.3	15.64
Zm00001d024532_P001	Maize	nucleus	10.19	15.45
Zm00001d051527_P001	Maize	cytosol, nucleus, peroxisome, plastid	10.56	15.2
Zm00001d013187_P001	Maize	plastid	10.56	14.69
Zm00001d017702_P001	Maize	peroxisome	10.0	14.21
Zm00001d033310_P001	Maize	nucleus	11.11	13.92
Zm00001d020384_P001	Maize	nucleus	11.11	11.86
Zm00001d032249_P002	Maize	plastid	9.63	10.79
Zm00001d020382_P001	Maize	nucleus, plastid	2.04	10.28

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:103627002	MapMan:35.1	UniProt:A0A1D6H648	ProteinID:AQK70267.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF20	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI000220E9B0	EnsemblPlantsGene:Zm00001d016175	EnsemblPlants:Zm00001d016175_P001	EnsemblPlants:Zm00001d016175_T001	SEG:seg

Description

G2-like-transcription factor 39Homeodomain-like superfamily protein

Coordinates

chr5:-:148523498..148526256

Molecular Weight (calculated)

58741.9 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.728

Length

540 amino acids

Sequence
(BLAST)

001: MVAREEQAMT REVKGKGLLV DILDDHEEVS IDNSKLLDLN EGFDVEDEGG EAAGDDEDEE DEGEEGDDGG STTDVGGSAS SSNNRSSNNN NSESEKADAK
101: GGSKSEVSGE QRVPSVRQYN RSKLPRLRWT PDLHMAFVHA VERLGGQERA TPKLVLQMMN VRGLSIAHVK SHLQMYRSKK LDQDGRPRGA VSSVYSPMDF
201: HFMRADHRRF HNMSFFQRAA ASASSSGGQE RGGFFASRNF STPELSRLYG LLHHRPAPTQ TFDFRNSSFR NHEWPWAASS NQQEAMTISR KHVVMPPSTS
301: PQTHASLASS AALRSDRRWW PFTEAGAAVA AGEHRAGTGV TSVKFDNCVG SSSRPLPLPM SPAVCGDRRL PFRWRHGGSS RDVVVGYPGS SSMVAKRSSS
401: DPVVIDDGHQ LERQNSKHVV EPTRASTATP AEEDEACLKR RPSSPVEAQD ATTTTLDLQL SLSPTTASAK KRKTSGSFFM DDTSCEFSTS LSLSPPVAAP
501: AVSTQQRQEK TRRSSDDNGG GGGVLGQSTL DLTMSIRALE

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.