Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G109700.1 | Wheat | nucleus | 94.32 | 93.92 |
| HORVU6Hr1G019650.5 | Barley | nucleus | 86.32 | 85.42 |
| TraesCS6B01G138200.1 | Wheat | nucleus | 90.74 | 81.63 |
| Os02t0241200-00 | Rice | nucleus | 62.11 | 54.13 |
| EES04827 | Sorghum | nucleus | 49.47 | 44.26 |
| Zm00001d016175_P001 | Maize | nucleus | 48.84 | 42.96 |
| VIT_12s0028g02080.t01 | Wine grape | nucleus | 19.79 | 38.84 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 40.63 | 37.33 |
| PGSC0003DMT400011207 | Potato | nucleus | 16.42 | 32.91 |
| AT2G42660.1 | Thale cress | nucleus | 17.05 | 31.76 |
| Solyc03g006150.2.1 | Tomato | extracellular, nucleus | 19.79 | 30.62 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 20.42 | 29.94 |
| GSMUA_Achr7P09370_001 | Banana | nucleus | 23.58 | 29.63 |
| TraesCS7D01G457400.1 | Wheat | nucleus | 15.37 | 29.08 |
| KRH22274 | Soybean | nucleus | 22.53 | 29.0 |
| KRH27060 | Soybean | nucleus | 22.32 | 28.8 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 20.42 | 28.45 |
| TraesCS7D01G457600.1 | Wheat | nucleus | 14.53 | 27.94 |
| KRH11029 | Soybean | nucleus | 21.26 | 27.67 |
| TraesCS7D01G457500.1 | Wheat | nucleus | 14.32 | 27.64 |
| Solyc02g076670.2.1 | Tomato | nucleus | 19.58 | 27.51 |
| PGSC0003DMT400026419 | Potato | nucleus | 20.0 | 27.3 |
| CDY42825 | Canola | nucleus | 18.74 | 27.22 |
| CDY67147 | Canola | nucleus | 18.74 | 27.22 |
| TraesCS7D01G457300.1 | Wheat | nucleus | 14.11 | 26.8 |
| KRH21258 | Soybean | nucleus | 20.84 | 26.54 |
| KRH42874 | Soybean | nucleus | 22.11 | 26.12 |
| KRH58975 | Soybean | nucleus | 21.89 | 25.94 |
| TraesCS6D01G236000.1 | Wheat | mitochondrion | 14.74 | 23.03 |
| TraesCS2D01G400100.2 | Wheat | mitochondrion, nucleus | 13.26 | 21.58 |
| TraesCS1D01G205800.1 | Wheat | nucleus | 15.37 | 20.74 |
| Bra000270.1-P | Field mustard | nucleus | 12.42 | 20.49 |
| TraesCS6D01G011600.1 | Wheat | nucleus | 13.05 | 18.67 |
| TraesCS5D01G075600.1 | Wheat | nucleus | 13.47 | 18.66 |
| TraesCS4D01G071300.1 | Wheat | nucleus | 13.05 | 16.71 |
| TraesCS4D01G320400.1 | Wheat | nucleus | 14.74 | 16.32 |
| TraesCS6D01G248300.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 12.21 | 16.25 |
| TraesCS7D01G294400.1 | Wheat | nucleus | 11.79 | 16.14 |
| TraesCS5D01G412800.1 | Wheat | mitochondrion, plastid | 12.63 | 15.92 |
| TraesCS5D01G209600.1 | Wheat | nucleus, plastid | 12.84 | 13.59 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G098200.1 | EnsemblPlantsGene:TraesCS6D01G098200 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF20 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:61791663..61793487
Molecular Weight (calculated)
51730.0 Da
IEP (calculated)
9.556
GRAVY (calculated)
-0.648
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MITREEERII GDVEDKQVLA KITMDDRKRS MSGSMLDLNE GIHMESDDGE VGDDNDEEEE DGGSTTDVAG SRSSSNNSST NHALETQQGT GGGEHRVRQY
101: NRSKLPRLRW TPDLHMAFIR AVERLGGQER ATPKLVLQMM NVRGLSIAHV KSHLQMYRSK KLDHHGQRIR GAISSVFSPM DFHSMRGDRR FHDMLLQRAA
201: ALSSTAERGG FFVSRNGGGG GGNTNSRLYG ILQHHHLPSP MQSGFKNGSF RNQEWAFDHR NMMARNDVKA SSATPHFFAS SSVRRWPLIS AVAGAGEQMR
301: DESFGYFTGH GSGPLSRAMA PATSVVPGGG SHRLPFRWHG GDGGKGAKAT SSDPVMIVEA LDSQKQKHLE QQRALITAAD KARLPAETPE LELSLSPATA
401: IDATDGTPSK KRKKSAAASR EQELEHANKL SISLSLMPPA ASMPMQGQEK IRGGSVEAAL GQSTLDLTMS IKALE
101: NRSKLPRLRW TPDLHMAFIR AVERLGGQER ATPKLVLQMM NVRGLSIAHV KSHLQMYRSK KLDHHGQRIR GAISSVFSPM DFHSMRGDRR FHDMLLQRAA
201: ALSSTAERGG FFVSRNGGGG GGNTNSRLYG ILQHHHLPSP MQSGFKNGSF RNQEWAFDHR NMMARNDVKA SSATPHFFAS SSVRRWPLIS AVAGAGEQMR
301: DESFGYFTGH GSGPLSRAMA PATSVVPGGG SHRLPFRWHG GDGGKGAKAT SSDPVMIVEA LDSQKQKHLE QQRALITAAD KARLPAETPE LELSLSPATA
401: IDATDGTPSK KRKKSAAASR EQELEHANKL SISLSLMPPA ASMPMQGQEK IRGGSVEAAL GQSTLDLTMS IKALE
001: MAGRSSPGKC STWLDLNREE TVEKNNEEES SVEDEDQITN NVRQYIRSNM PRLRWTPDLH LSFVRAVQRL GGPDRATPKL VLEMMNLKGL SIAHVKSHLQ
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
101: MYRSKKLEPS SRPGFGAFMS GQRSYLMDMI DSRCIPHSDL RHAYNSKTVP SRVLNQDAVV TNLGGNFLMR PSSWFSGLCR NDRDSTENKT LPLLEIRKKN
201: NEKRVRDEEV SSVKRLKSMS GGGIQLPEFG NCRQKPTDDI NTMLSLSLLS TSSEP
Arabidopsis Description
At2g45350/F14N22.7 [Source:UniProtKB/TrEMBL;Acc:Q9SJJ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.