CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016175_P001	Maize	nucleus	83.43	82.04
TraesCS6A01G109700.1	Wheat	nucleus	44.82	49.9
TraesCS6D01G098200.1	Wheat	nucleus	44.26	49.47
HORVU6Hr1G019650.5	Barley	nucleus	43.69	48.33
Os02t0241200-00	Rice	nucleus	48.59	47.34
TraesCS6B01G138200.1	Wheat	nucleus	45.76	46.02
VIT_12s0028g02080.t01	Wine grape	nucleus	17.7	38.84
OQU76531	Sorghum	nucleus	35.97	37.3
PGSC0003DMT400011207	Potato	nucleus	15.25	34.18
KRH22274	Soybean	nucleus	22.41	32.25
KRH27060	Soybean	nucleus	22.22	32.07
GSMUA_Achr7P09370_001	Banana	nucleus	22.79	32.01
Solyc03g006150.2.1	Tomato	extracellular, nucleus	18.46	31.92
KRH11029	Soybean	nucleus	21.09	30.68
AT2G42660.1	Thale cress	nucleus	14.69	30.59
KRH21258	Soybean	nucleus	20.72	29.49
Solyc02g076670.2.1	Tomato	nucleus	18.64	29.29
KRH58975	Soybean	nucleus	21.85	28.93
CDY42825	Canola	nucleus	17.7	28.75
CDY67147	Canola	nucleus	17.7	28.75
EES15503	Sorghum	nucleus	19.77	28.69
EES09087	Sorghum	nucleus	19.59	28.65
KRH42874	Soybean	nucleus	21.66	28.61
PGSC0003DMT400026419	Potato	nucleus	18.64	28.45
OQU76857	Sorghum	nucleus	12.05	25.0
KXG31083	Sorghum	nucleus	13.75	22.81
EES11274	Sorghum	nucleus	13.37	22.76
Bra000270.1-P	Field mustard	nucleus	11.86	21.88
KXG40258	Sorghum	nucleus	15.25	19.95
EER93393	Sorghum	mitochondrion, plastid	11.11	15.45
EER91215	Sorghum	nucleus	11.86	14.75
OQU79478	Sorghum	nucleus	12.81	14.72
EES13398	Sorghum	nucleus	10.36	14.63
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	9.79	14.05
KXG25180	Sorghum	nucleus	11.49	12.84
KXG35581	Sorghum	nucleus	12.05	12.24

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	EntrezGene:8085581	UniProt:C5XYZ4	EnsemblPlants:EES04827	ProteinID:EES04827
ProteinID:EES04827.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF20
InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3004G106300	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0001A8522C	RefSeq:XP_002451851.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:10122464..10125535

Molecular Weight (calculated)

57854.9 Da

IEP (calculated)

6.687

GRAVY (calculated)

-0.727

Length

531 amino acids

Sequence
(BLAST)

001: MVAREEQVVR EVKGKGVLVD ILEDDDEERS IDNNKLLDLN EGFDAESEEG EVGDDEEDEG EEGDDGGSTT DVGGSGSSSN NSSTNNNSES KKADGKGGSK
101: SEVSGEQRVP SVRQYNRSKL PRLRWTPDLH MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDQD GRPRGAVSSV YSPMDFHFMR
201: ADRRFHDLSF FQRAAALSSS RQLERGGFFA RNCSAPELSR LYGLLHHRPA PTQTFDFRNS SFRKHEWASS NQQEAITMSR KHVTPPSTSP QTHPLASPVA
301: LRSDRRWWPF TDAGAAAAAA AAVAADEHRE ETGTNVKFDS CIGSSSRPLP LAMSPAAVSG DHRLPFRWRH GGSGRDFVFG YPGSSSKITT RSSDPVVIDD
401: GQPLEPQNSK HVVEPTRASA APPDEASFIR RRPSPVEAQD ATPDLQLSLS PSSSVLASKK RKTISSSSMD TTTSCEFSIS LSLSPPAAAV SMQQQQRQEK
501: TRRSSDSSGG GGEGVLGQST LDLTMSIRAL E

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.