CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033310_P001	Maize	nucleus	76.81	76.1
Os03t0624000-00	Rice	nucleus	26.46	62.09
OQU79478	Sorghum	nucleus	42.39	39.18
GSMUA_Achr4P32400_001	Banana	plastid	21.55	36.65
GSMUA_Achr10P...	Banana	nucleus	17.8	36.36
EER93393	Sorghum	mitochondrion, plastid	30.21	33.77
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	23.65	27.3
EES13398	Sorghum	nucleus	21.31	24.2
KXG25180	Sorghum	nucleus	22.48	20.21
KXG31083	Sorghum	nucleus	14.05	18.75
KXG35581	Sorghum	nucleus	22.95	18.74
OQU76857	Sorghum	nucleus	11.01	18.36
EES11274	Sorghum	nucleus	13.11	17.95
EES15503	Sorghum	nucleus	14.05	16.39
EES09087	Sorghum	nucleus	13.58	15.98
KXG40258	Sorghum	nucleus	12.65	13.3
OQU76531	Sorghum	nucleus	15.46	12.89
EES04827	Sorghum	nucleus	14.75	11.86

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:C5WS76	EnsemblPlants:EER91215	ProteinID:EER91215	ProteinID:EER91215.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31496	PANTHER:PTHR31496:SF12	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3001G164500	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI00081AB727	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:13592519..13603864

Molecular Weight (calculated)

46165.0 Da

IEP (calculated)

10.537

GRAVY (calculated)

-0.697

Length

427 amino acids

Sequence
(BLAST)

001: MATTAAPPDL SLHIRPPSPP DDARNSGGGG GGGHRQANHE TDVFFAKQTL CLGLVETTTT TTTTTAQQDG QCDIQQQQQP QRLHQPSQIQ KFKKSSSAAL
101: SGGTTRSGNG GSGGGKRSSR APRMRWTTAL HAHFVHAVEL LGGHERATPK SVLELMNVKD LTLAHVKSHL QMYRTVKGTT ADRSCAAGHV QMMRDMGFLQ
201: RGCEMNGFEA FSNSTSNATA NIRMQQAAAG SPAGKQEVAW FLRPPSFAHQ SGAVPLPLPC PYLMSAHHNR YLLSQNQGWR ARGAQQDAAA SQVLGQDNAA
301: RRLHPGFTDT AIRQRPSPWS AGVASRWSST TTTAAAAVPS PSSGRSSISS TEQPACSWTT MTNKHHHQQH QQQQQQVSST IAVPNLEISL GRQGWQHNLQ
401: DHHQQQQQQQ RSGESTAPKE LTLLKCL

Best Arabidopsis Sequence Match ( AT5G42630.2 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRL LFIYIFIFVK FCI

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.