CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024532_P001	Maize	nucleus	89.1	94.1
Zm00001d049511_P001	Maize	nucleus	83.51	90.49
HORVU7Hr1G070420.2	Barley	nucleus	34.04	76.65
Os08t0160300-00	Rice	nucleus	69.15	75.36
TraesCS7A01G298700.1	Wheat	nucleus	65.69	71.59
TraesCS7B01G200700.1	Wheat	nucleus, plastid	65.69	71.18
TraesCS7D01G294400.1	Wheat	nucleus	65.16	70.61
GSMUA_Achr10P...	Banana	nucleus	40.43	54.68
PGSC0003DMT400038366	Potato	nucleus	27.66	40.31
Solyc08g076400.2.1	Tomato	nucleus	26.86	38.4
GSMUA_Achr7P02420_001	Banana	nucleus	31.38	33.33
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	29.79	30.27
EER93393	Sorghum	mitochondrion, plastid	26.06	25.65
KXG25180	Sorghum	nucleus	32.18	25.47
KXG35581	Sorghum	nucleus	35.11	25.24
EER91215	Sorghum	nucleus	24.2	21.31
OQU76857	Sorghum	nucleus	13.3	19.53
OQU79478	Sorghum	nucleus	22.87	18.61
KXG31083	Sorghum	nucleus	13.03	15.31
EES09087	Sorghum	nucleus	14.63	15.15
EES15503	Sorghum	nucleus	14.36	14.75
EES11274	Sorghum	nucleus	10.9	13.14
KXG40258	Sorghum	nucleus	12.77	11.82
OQU76531	Sorghum	nucleus	15.96	11.72
EES04827	Sorghum	nucleus	14.63	10.36

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:C5YHD1	EnsemblPlants:EES13398	ProteinID:EES13398	ProteinID:EES13398.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31496	PANTHER:PTHR31496:SF4	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3007G050500	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0003C69413	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:5117597..5122499

Molecular Weight (calculated)

39103.2 Da

IEP (calculated)

7.561

GRAVY (calculated)

-0.283

Length

376 amino acids

Sequence
(BLAST)

001: MELFPSQPDL SLQIGLPASA TPHDHHHHHG ATALSARFLA AAAAGGGGSN GVVPGGNPAA SMAPSSLQLP MPMPLPLPVQ LPMPVPPNAA AAAGAGGGLY
101: YHPDTAAAAA MLRPIRGMPL YQHPHTHAVP PPTFPPPHAA GAGAGPCFCE PCHVAAGAWR RAGCGVGARV AGLGFPPAKR AARAPRMRWT STLHARFVHA
201: VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQMYRTVK NTERPAASSD QADGFENGSA GEICDDNSSL DLHGSAGRPE SAAARHGRLA ACNDHGSSTG
301: AHGALWNSSS REDWTGFPSD SNTGSMSMHS RSLKDQTMHS KSLEILSDMN SSCVSETTSC ASELNLEFTL GPRIRH

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.