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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d017563_P002 Maize nucleus 85.94 79.48
EES11274 Sorghum nucleus 42.5 43.59
OQU76857 Sorghum nucleus 21.25 26.56
HORVU0Hr1G016420.1 Barley mitochondrion 17.19 23.31
HORVU6Hr1G064920.1 Barley mitochondrion 17.19 23.31
TraesCS6D01G236000.1 Wheat mitochondrion 21.56 22.7
TraesCS6A01G254700.1 Wheat nucleus 20.31 21.45
TraesCS6B01G270800.1 Wheat nucleus 20.31 20.44
KXG40258 Sorghum nucleus 23.12 18.23
EES09087 Sorghum nucleus 20.31 17.91
EES15503 Sorghum nucleus 20.0 17.49
OQU76531 Sorghum nucleus 22.5 14.06
EER91215 Sorghum nucleus 18.75 14.05
EES04827 Sorghum nucleus 22.81 13.75
EES13398 Sorghum nucleus 15.31 13.03
KXG30956 Sorghum cytosol, nucleus, peroxisome, plastid 15.0 12.97
EER93393 Sorghum mitochondrion, plastid 14.06 11.78
OQU79478 Sorghum nucleus 15.62 10.82
KXG25180 Sorghum nucleus 15.62 10.53
KXG35581 Sorghum nucleus 15.62 9.56
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.3UniProt:A0A194YS67GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:Homeobox-like_sfInterPro:IPR017930EnsemblPlants:KXG31083ProteinID:KXG31083ProteinID:KXG31083.2InterPro:Myb_dom
InterPro:Myb_dom_plantsPFAM:PF00249PFscan:PS51294PANTHER:PTHR31314PANTHER:PTHR31314:SF6InterPro:SANT/Myb
EnsemblPlantsGene:SORBI_3004G285300SUPFAM:SSF46689TIGRFAMs:TIGR01557UniParc:UPI0003C6D7C3SEG:seg:
Description
hypothetical protein
Coordinates
chr4:-:62780886..62783642
Molecular Weight (calculated)
34542.1 Da
IEP (calculated)
11.189
GRAVY (calculated)
-0.568
Length
320 amino acids
Sequence
(BLAST)
001: MGGAAGGGRN GAATRRYNRS KVPRLRWTSE LHRNFVRAVD CLGGQDKATP KLILQLMGVR GLTIAHVKSH LQMYRSSGHD IRKREMQPRL RHLKHSFTID
101: EGGPKEFICP PMKRAEAAGP EAAATATATH ESMQGNSDMG APGTRRCGDD YTRAIPMGSS RRITEGLGGW QQWQRDAAAR AATAASTLRE LGFWVRGTEE
201: PFKVRQTGRP IANRHSPVAR QLSSKEIKGE NGRFLCGTAA ATRDEAAARR RSPSSRPPAS SIDPKAVAAV SWWPSEEGGC VLPPLSSSTS LSACSGPSGS
301: CIFARQRRVN LDLSLSICGS
Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)
001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.