CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048448_P001	Maize	nucleus	21.43	75.0
Zm00001d027492_P001	Maize	mitochondrion	73.89	69.12
TraesCS5A01G496100.1	Wheat	nucleus	45.32	48.68
TraesCS4B01G323600.1	Wheat	nucleus	45.07	47.78
HORVU4Hr1G082560.1	Barley	plastid	44.83	47.64
TraesCS4D01G320400.1	Wheat	nucleus	44.83	42.42
OQU76857	Sorghum	nucleus	17.49	27.73
EES11274	Sorghum	nucleus	17.98	23.4
KXG31083	Sorghum	nucleus	18.23	23.12
EES15503	Sorghum	nucleus	16.5	18.31
EES09087	Sorghum	nucleus	16.01	17.91
EES04827	Sorghum	nucleus	19.95	15.25
OQU76531	Sorghum	nucleus	17.98	14.26
EER93393	Sorghum	mitochondrion, plastid	12.56	13.35
EES13398	Sorghum	nucleus	11.82	12.77
EER91215	Sorghum	nucleus	13.3	12.65
OQU79478	Sorghum	nucleus	14.04	12.34
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	11.08	12.16
KXG25180	Sorghum	nucleus	13.55	11.58
KXG35581	Sorghum	nucleus	13.3	10.32

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A1B6QQR0	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	EnsemblPlants:KXG40258	ProteinID:KXG40258	ProteinID:KXG40258.1
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF2
InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3001G519100	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00081AD673	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:78525584..78531018

Molecular Weight (calculated)

43499.9 Da

IEP (calculated)

8.300

GRAVY (calculated)

-0.608

Length

406 amino acids

Sequence
(BLAST)

001: MTMVRTTTVV GRERSGGVRQ YNRSKVPRLR WTPDLHHCFV HAIHKLGGQD KATPKRVLQL MGVGGLTISH VKSHLQMYRN MRNDLGMQGT MQVHRMQDQE
101: HVYGGGMHME LCTNILVQQQ PQQQCDHECD APCCICCHSP KPGKEATLFQ RQLKRAETRR EREEIDGSAS PKRVVLLRGG PGPGICESDG SPCCALAAAG
201: GYNYMRMMQA AMGVAAAAGA PPPPPPPRHA ETMVEPGGRG PGIKQTQLQL ARPGADGDGG DEHAPPPPPP PSNSKQRFTF LGFVVAPGPP PPPPPPPPCC
301: SSRDRDHPFE MVGTALTHHR SSAEAARRLP RGLETPPSKA AVAQQVGDPC SSSAGSEEDD DGCSLSLSLA LDTRSSRDGD EGGRLSPTAT ASSRSRISLD
401: LSLSTL

Best Arabidopsis Sequence Match ( AT4G04605.1 )
(BLAST)

001: MKNPIVRSYV RSKVPRLRWN SDLHNSFVQA VEQLGGENRA TPKMVLQLMD VRGLTISHVK SHLQMYRGMK LEESMQEEIL AKRSVRVTGQ VTWWQFQHYL
101: HNYQRLQGNA NFFQNQQRQE AGIYEKIITF GQSSNETKEV PSDYFTCKSL YETSRAPQNK TRDDDENGEA VVAIEDDGNV VDEHDDEDAN DDEVTLSLNS
201: IKVSKSEEEL SLELTLGLKA

Arabidopsis Description

Myb-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B8R6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.