Factsheet for TraesCS4D01G320400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G496100.1	Wheat	nucleus	80.19	91.01
TraesCS4B01G323600.1	Wheat	nucleus	79.72	89.3
HORVU4Hr1G082560.1	Barley	plastid	69.7	78.27
Zm00001d048448_P001	Maize	nucleus	17.25	63.79
KXG40258	Sorghum	nucleus	42.42	44.83
TraesCS1D01G205800.1	Wheat	nucleus	34.73	42.33
Zm00001d027492_P001	Maize	mitochondrion	40.33	39.86
TraesCS7D01G457600.1	Wheat	nucleus	15.85	27.53
TraesCS7D01G457300.1	Wheat	nucleus	15.85	27.2
TraesCS7D01G457500.1	Wheat	nucleus	15.38	26.83
TraesCS7D01G457400.1	Wheat	nucleus	15.38	26.29
TraesCS6D01G236000.1	Wheat	mitochondrion	16.32	23.03
TraesCS2D01G400100.2	Wheat	mitochondrion, nucleus	15.38	22.6
TraesCS5D01G158300.1	Wheat	nucleus	15.38	20.37
TraesCS4D01G131500.1	Wheat	nucleus	13.75	17.3
TraesCS5D01G075600.1	Wheat	nucleus	12.82	16.04
TraesCS6D01G011600.1	Wheat	nucleus	12.12	15.66
TraesCS7D01G294400.1	Wheat	nucleus	12.12	14.99
TraesCS7D01G334100.1	Wheat	nucleus	17.95	14.89
TraesCS6D01G098200.1	Wheat	nucleus	16.32	14.74
TraesCS4D01G071300.1	Wheat	nucleus	12.59	14.56
TraesCS5D01G412800.1	Wheat	mitochondrion, plastid	12.35	14.06
TraesCS6D01G248300.1	Wheat	cytosol, nucleus, peroxisome, plastid	11.65	14.01
TraesCS5D01G209600.1	Wheat	nucleus, plastid	12.59	12.03

Protein Annotations

EnsemblPlants:TraesCS4D01G320400.1	EnsemblPlantsGene:TraesCS4D01G320400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:Myb_dom_plants	InterPro:SANT/Myb
PANTHER:PTHR31314	PANTHER:PTHR31314:SF2	PFAM:PF00249	PFscan:PS51294	SEG:seg	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:483601048..483605102

Molecular Weight (calculated)

45335.0 Da

IEP (calculated)

10.313

GRAVY (calculated)

-0.500

Length

429 amino acids

Sequence
(BLAST)

001: MTMAARRTSR EGNCGGGGGV RQYNRSKVPR LRWTSALHRC FVHAIHSLGG HDRATPKRVL QVMGVGGLTI SHVKSHLQMY RNMRNDLGMQ GMQQAGQQSG
101: QEEHTRATGG GTEVCTDDDE ECRVPGYGSP KPRKESTTLP LHPQLKRRAG ASETVTREEV SASPTSLLRV KRGRGICEGR DGGGSYDVRH VAVLPLTCGP
201: VGNLAHMSAA QWHTAHGRGA ASGRDMESSS HAPAAAGGQY HVHMDMMQAH AVLQAPPMAA ARLVEPRPSM PLGMKQKQKH RREPWMPTAR LHRGGDGELG
301: AAASTLKFLG FLVAPGRHPP RPRAACCDGY PIEVGTPPNR AAAYTASRTD GVRPCRLQPP GNVVDAGFTN LTLAGERDGG YSLSLALALC PAGGGGAKSS
401: LLSSSTASSS SSSSGSRISL DLSLSTLDS

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.