Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G180900.1 | Wheat | nucleus | 93.55 | 93.55 |
| TraesCS4B01G136900.1 | Wheat | nucleus | 91.79 | 92.33 |
| TraesCS5D01G158300.1 | Wheat | nucleus | 57.77 | 60.8 |
| VIT_08s0058g00250.t01 | Wine grape | nucleus | 16.13 | 47.41 |
| EES09087 | Sorghum | nucleus | 48.68 | 45.73 |
| EES15503 | Sorghum | nucleus | 48.39 | 45.08 |
| Os11t0106100-00 | Rice | nucleus | 26.69 | 42.72 |
| Solyc09g005030.1.1 | Tomato | nucleus | 18.18 | 42.47 |
| Zm00001d005087_P001 | Maize | nucleus | 42.82 | 41.95 |
| VIT_06s0004g07000.t01 | Wine grape | nucleus | 20.23 | 38.98 |
| Os12t0105600-01 | Rice | nucleus | 28.15 | 30.57 |
| Solyc10g076460.1.1 | Tomato | nucleus | 25.81 | 29.14 |
| Solyc06g051060.2.1 | Tomato | nucleus | 21.7 | 29.13 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 28.15 | 28.92 |
| PGSC0003DMT400041071 | Potato | nucleus | 24.93 | 28.15 |
| PGSC0003DMT400068508 | Potato | nucleus | 25.81 | 26.91 |
| Bra000180.1-P | Field mustard | nucleus | 30.5 | 26.74 |
| CDY07612 | Canola | nucleus | 30.5 | 26.53 |
| CDY52431 | Canola | nucleus | 30.21 | 26.48 |
| TraesCS7D01G457600.1 | Wheat | nucleus | 18.77 | 25.91 |
| KRH75999 | Soybean | nucleus | 25.81 | 25.66 |
| CDX74803 | Canola | nucleus | 28.74 | 25.52 |
| CDY07070 | Canola | nucleus | 31.09 | 25.48 |
| PGSC0003DMT400077217 | Potato | nucleus | 28.15 | 25.2 |
| AT2G40260.1 | Thale cress | nucleus | 30.21 | 25.12 |
| KRH49433 | Soybean | nucleus | 26.69 | 24.86 |
| KRH65638 | Soybean | nucleus | 25.22 | 24.86 |
| Bra004973.1-P | Field mustard | nucleus | 29.62 | 24.82 |
| TraesCS7D01G457500.1 | Wheat | nucleus | 17.89 | 24.8 |
| KRH00305 | Soybean | nucleus | 26.69 | 24.66 |
| CDX93206 | Canola | nucleus | 30.21 | 24.64 |
| CDY18860 | Canola | nucleus | 29.03 | 24.32 |
| TraesCS7D01G457300.1 | Wheat | nucleus | 17.6 | 24.0 |
| TraesCS7D01G457400.1 | Wheat | nucleus | 17.6 | 23.9 |
| TraesCS6D01G236000.1 | Wheat | mitochondrion | 18.77 | 21.05 |
| TraesCS2D01G400100.2 | Wheat | mitochondrion, nucleus | 17.6 | 20.55 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 28.45 | 20.42 |
| VIT_13s0067g01500.t01 | Wine grape | extracellular, vacuole | 27.86 | 20.26 |
| TraesCS1D01G205800.1 | Wheat | nucleus | 19.06 | 18.47 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 25.81 | 17.02 |
| TraesCS6D01G011600.1 | Wheat | nucleus | 16.13 | 16.57 |
| TraesCS5D01G075600.1 | Wheat | nucleus | 15.54 | 15.45 |
| Bra017021.1-P | Field mustard | nucleus | 16.42 | 15.38 |
| TraesCS7D01G294400.1 | Wheat | nucleus | 15.54 | 15.27 |
| TraesCS4D01G071300.1 | Wheat | nucleus | 16.42 | 15.09 |
| TraesCS6D01G248300.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 15.54 | 14.85 |
| TraesCS4D01G320400.1 | Wheat | nucleus | 17.3 | 13.75 |
| TraesCS5D01G412800.1 | Wheat | mitochondrion, plastid | 14.37 | 13.0 |
| TraesCS5D01G209600.1 | Wheat | nucleus, plastid | 16.42 | 12.47 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G131500.1 | EnsemblPlantsGene:TraesCS4D01G131500 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | InterPro:SANT/Myb |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SUPFAM:SSF46689 |
| TIGRFAMs:TIGR01557 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:118373076..118374679
Molecular Weight (calculated)
37909.4 Da
IEP (calculated)
8.485
GRAVY (calculated)
-0.728
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTSSMGNDG SSAASNDDST VEEEGGQDMT RAGDSSSSVR PYVRSKNPRL RWTPELHHCF VRAVERLGGQ DCATPKLVLQ LMNVRGLSIG HVKSHLQMYR
101: SKKIDHSGQV IIGHLQQGGQ VYNYAHLPFH HRVSGAGTML SRFGTRPCPP WRGSWHEPYW LHGHRLLGSK PYYSSSARAH HDEAPLRARA QHVSGYNPAL
201: IVQESCSSRN DHHAMNRYNY ERRPMQAATM VDNNDHIHGR DIDLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDHQVD VNEELKSTAT RLSLSLFSPS
301: PSTLDRKGSS ASDHALDLDV NVDKIGKVQY AIRASTLGLS I
101: SKKIDHSGQV IIGHLQQGGQ VYNYAHLPFH HRVSGAGTML SRFGTRPCPP WRGSWHEPYW LHGHRLLGSK PYYSSSARAH HDEAPLRARA QHVSGYNPAL
201: IVQESCSSRN DHHAMNRYNY ERRPMQAATM VDNNDHIHGR DIDLDLSLDI GGGQRLEMKS KRGCTRWGKQ AEEDDDHQVD VNEELKSTAT RLSLSLFSPS
301: PSTLDRKGSS ASDHALDLDV NVDKIGKVQY AIRASTLGLS I
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.