Factsheet for VIT_06s0004g07000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01380.t01	Wine grape	mitochondrion	29.38	68.42
VIT_12s0028g00980.t01	Wine grape	nucleus	23.16	56.94
VIT_08s0058g00250.t01	Wine grape	nucleus	36.16	55.17
VIT_00s1624g00010.t01	Wine grape	nucleus	31.07	44.72
Os11t0106100-00	Rice	nucleus	37.29	30.99
VIT_12s0028g02080.t01	Wine grape	nucleus	41.24	30.17
Os12t0105600-01	Rice	nucleus	40.68	22.93
GSMUA_Achr7P22410_001	Banana	nucleus	41.24	21.99
TraesCS5D01G158300.1	Wheat	nucleus	38.98	21.3
TraesCS5A01G153000.1	Wheat	nucleus	38.98	21.17
Zm00001d005087_P001	Maize	nucleus	40.68	20.69
TraesCS5B01G151800.1	Wheat	nucleus	38.98	20.47
TraesCS4D01G131500.1	Wheat	nucleus	38.98	20.23
TraesCS4A01G180900.1	Wheat	nucleus	38.42	19.94
VIT_01s0137g00050.t01	Wine grape	nucleus	33.9	19.8
EES15503	Sorghum	nucleus	40.11	19.4
EES09087	Sorghum	nucleus	38.98	19.01
TraesCS4B01G136900.1	Wheat	nucleus	36.16	18.88
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	45.2	17.06
VIT_18s0001g11390.t01	Wine grape	nucleus	27.68	14.89
VIT_16s0039g01900.t01	Wine grape	nucleus	26.55	14.55
VIT_02s0012g01940.t01	Wine grape	nucleus	28.81	13.86
VIT_04s0043g00340.t01	Wine grape	nucleus	26.55	10.06

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100246669	wikigene:100246669	MapMan:35.1	ProteinID:CBI15915	ProteinID:CBI15915.3
UniProt:D7SJT9	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100246669	wikigene:LOC100246669	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI0001BE1182	ArrayExpress:VIT_06s0004g07000	EnsemblPlantsGene:VIT_06s0004g07000	EnsemblPlants:VIT_06s0004g07000.t01	RefSeq:XP_002278456	RefSeq:XP_002278456.1

Description

No Description!

Coordinates

chr6:-:7749760..7750762

Molecular Weight (calculated)

20138.8 Da

IEP (calculated)

9.209

GRAVY (calculated)

-0.855

Length

177 amino acids

Sequence
(BLAST)

001: MERSMEESGK DDGSKTIDPF DGKDDEQEDD GNKTKTSVSS GNSVVDQESE KKTTSNGVRQ YVRSKVPRLR WTPNLHLCFV RAVERLGGQE RATPKLVQQL
101: MNIKGLSIAH VKSHLQMYRS KKIDDKGQVI NSRGQLHPNG SAVHNLWQLP TFESIDQRVG FNFRYKTMCA CFDLYKC

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.