Factsheet for VIT_16s0039g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01380.t01	Wine grape	mitochondrion	13.62	57.89
CDX84102	Canola	nucleus	42.41	50.55
VIT_12s0028g00980.t01	Wine grape	nucleus	10.84	48.61
VIT_02s0012g01940.t01	Wine grape	nucleus	52.32	45.92
VIT_00s1624g00010.t01	Wine grape	nucleus	14.55	38.21
VIT_08s0058g00250.t01	Wine grape	nucleus	13.31	37.07
GSMUA_AchrUn_...	Banana	nucleus	34.37	34.15
TraesCS6B01G293700.1	Wheat	nucleus	35.29	32.11
TraesCS6A01G266400.1	Wheat	cytosol, nucleus, peroxisome, plastid	34.98	31.83
TraesCS6D01G248300.1	Wheat	cytosol, nucleus, peroxisome, plastid	34.98	31.65
GSMUA_Achr8P30770_001	Banana	nucleus	33.75	30.7
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	34.98	30.54
VIT_18s0001g11390.t01	Wine grape	nucleus	30.96	30.4
Zm00001d051527_P001	Maize	cytosol, nucleus, peroxisome, plastid	34.67	29.87
Os02t0696900-00	Rice	plasma membrane	33.75	29.54
Zm00001d017702_P001	Maize	peroxisome	34.67	29.47
VIT_04s0043g00340.t01	Wine grape	nucleus	41.18	28.48
VIT_06s0004g07000.t01	Wine grape	nucleus	14.55	26.55
VIT_12s0028g02080.t01	Wine grape	nucleus	17.34	23.14
VIT_01s0137g00050.t01	Wine grape	nucleus	15.79	16.83
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	16.72	11.51

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100256368	wikigene:100256368	MapMan:15.5.2.3	ProteinID:CCB50596	ProteinID:CCB50596.1
UniProt:F6HEF0	EMBL:FN595750	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0044212	InterPro:Homeobox-like_sf	EntrezGene:LOC100256368	wikigene:LOC100256368	InterPro:Myb_dom_plants
PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557
UniParc:UPI000210907E	ArrayExpress:VIT_16s0039g01900	EnsemblPlantsGene:VIT_16s0039g01900	EnsemblPlants:VIT_16s0039g01900.t01	unigene:Vvi.12238	RefSeq:XP_002272637
RefSeq:XP_002272637.1	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:1825309..1828526

Molecular Weight (calculated)

36805.4 Da

IEP (calculated)

10.066

GRAVY (calculated)

-0.848

Length

323 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLQISPPNTK PTSSWSRRDH QEADLGFWRS SMDSNKATPS SRKPDTASDL SLANPKALEP SSNHIHALHP KYHTLLAPPQ LQQKYHHHQE
101: GLHQQIGFLR PIRGIPIYQS TPPSFSFPHQ HSLDSSPSTI STTCFNSNGL QRSRFISRFP TKRSMRAPRM RWTTTLHARF VHAVELLGGH ERATPKSVLE
201: LMDVKDLTLA HVKSHLQMYR TIKTTDRPPA SSGQLDGLEG RLAGELSEDN MVDIEKNPQR CELVHQSRLG FDQDLDSCSL WKNSSRDDAW LHGKPRDSRG
301: STTPFEDNNM RRQKRIHFKK CYA

Best Arabidopsis Sequence Match ( AT1G32240.2 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEVRY IPFYKYNYIY ANMFCV

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.