Factsheet for VIT_18s0001g11390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01380.t01	Wine grape	mitochondrion	13.07	56.58
KRH05752	Soybean	nucleus	55.32	54.98
PGSC0003DMT400030518	Potato	nucleus	48.94	52.27
Solyc04g079600.2.1	Tomato	nucleus	48.33	51.62
KRH51927	Soybean	nucleus	51.67	51.52
VIT_12s0028g00980.t01	Wine grape	nucleus	10.94	50.0
KRH61226	Soybean	nucleus	50.15	49.85
CDY69225	Canola	mitochondrion	22.8	45.45
AT5G42630.1	Thale cress	nucleus	34.04	40.58
CDY23916	Canola	nucleus	32.52	40.23
Bra021038.1-P	Field mustard	plastid	21.88	40.22
VIT_08s0058g00250.t01	Wine grape	nucleus	13.37	37.93
CDY68011	Canola	nucleus	21.58	33.65
VIT_00s1624g00010.t01	Wine grape	nucleus	12.46	33.33
CDX78794	Canola	nucleus	31.0	32.69
CDY54255	Canola	nucleus	28.27	31.1
VIT_16s0039g01900.t01	Wine grape	nucleus	30.4	30.96
Bra040176.1-P	Field mustard	nucleus	29.48	30.6
AT4G17695.1	Thale cress	nucleus	29.79	30.43
VIT_02s0012g01940.t01	Wine grape	nucleus	33.13	29.62
VIT_06s0004g07000.t01	Wine grape	nucleus	14.89	27.68
VIT_04s0043g00340.t01	Wine grape	nucleus	32.52	22.91
VIT_12s0028g02080.t01	Wine grape	nucleus	16.41	22.31
Bra035311.1-P	Field mustard	nucleus	33.74	17.79
CDY02401	Canola	nucleus	33.74	17.79
VIT_01s0137g00050.t01	Wine grape	nucleus	16.11	17.49
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	16.72	11.73

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100259077	wikigene:100259077	MapMan:15.5.2.3	ProteinID:CCB45888	ProteinID:CCB45888.1
UniProt:F6H1F3	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212
InterPro:Homeobox-like_sf	EntrezGene:LOC100259077	wikigene:LOC100259077	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496
PANTHER:PTHR31496:SF12	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGR:TC62239	TIGRFAMs:TIGR01557	UniParc:UPI00021083B5
ArrayExpress:VIT_18s0001g11390	EnsemblPlantsGene:VIT_18s0001g11390	EnsemblPlants:VIT_18s0001g11390.t01	RefSeq:XP_002282153	RefSeq:XP_002282153.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:9692568..9695345

Molecular Weight (calculated)

36247.8 Da

IEP (calculated)

7.293

GRAVY (calculated)

-0.658

Length

329 amino acids

Sequence
(BLAST)

001: MGTTSPLPDL SLQISPPSIS DCEVKEVGYD GFMKKSFYSD RSSATDSGSS GSDLSHENGF FSPESGFNRG PVEPMLSLGL EMAALNPPPL ELPRNLHHNH
101: HNHQPQIYGR EFKRNSRMMN GSKRSIRAPR MRWTTTLHAH FVHAVQLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY RTVKSTDKGT GQGQTDMGLN
201: QRTGIGQVEL GGLSCDKADA TPSFSSNTPQ PSTPQKISRS SWSLSMETND EGRLSHENGL KYSHLMANDT KMEGHKVALH VAEGPKERVD SSALSPSDML
301: LNLEFTLGRP SWQIDYADQS PNELALLKC

Best Arabidopsis Sequence Match ( AT5G42630.1 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.