Factsheet for VIT_02s0012g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74367	Soybean	nucleus	44.29	59.06
VIT_10s0003g01380.t01	Wine grape	mitochondrion	11.96	57.89
KRH39575	Soybean	nucleus	60.05	56.67
CDY35557	Canola	nucleus	48.91	53.89
CDY43006	Canola	nucleus	49.46	53.53
CDX93847	Canola	nucleus	48.1	52.37
VIT_16s0039g01900.t01	Wine grape	nucleus	45.92	52.32
Bra023254.1-P	Field mustard	nucleus	51.9	52.19
AT1G32240.1	Thale cress	nucleus	54.35	51.55
CDY01293	Canola	nucleus	47.83	50.87
Bra033844.1-P	Field mustard	nucleus	54.08	50.77
VIT_12s0028g00980.t01	Wine grape	nucleus	9.24	47.22
VIT_08s0058g00250.t01	Wine grape	nucleus	12.23	38.79
VIT_00s1624g00010.t01	Wine grape	nucleus	11.96	35.77
VIT_04s0043g00340.t01	Wine grape	nucleus	45.11	35.55
PGSC0003DMT400034663	Potato	nucleus	43.21	35.33
Solyc11g011770.1.1	Tomato	nucleus	43.48	34.63
VIT_18s0001g11390.t01	Wine grape	nucleus	29.62	33.13
VIT_06s0004g07000.t01	Wine grape	nucleus	13.86	28.81
VIT_12s0028g02080.t01	Wine grape	nucleus	16.03	24.38
VIT_01s0137g00050.t01	Wine grape	nucleus	15.49	18.81
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	16.03	12.58

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250498	wikigene:100250498	MapMan:15.5.2.3	ProteinID:CCB57866	ProteinID:CCB57866.1
UniProt:F6HT56	EMBL:FN596247	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009791	GO:GO:0009908	GO:GO:0009944	GO:GO:0009987	GO:GO:0044212	GO:GO:0048440
GO:GO:0048481	InterPro:Homeobox-like_sf	EntrezGene:LOC100250498	wikigene:LOC100250498	InterPro:Myb_dom_plants	PFAM:PF00249
PANTHER:PTHR31496	PANTHER:PTHR31496:SF10	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000210994C
ArrayExpress:VIT_02s0012g01940	EnsemblPlantsGene:VIT_02s0012g01940	EnsemblPlants:VIT_02s0012g01940.t01	unigene:Vvi.11829	RefSeq:XP_002278005	RefSeq:XP_002278005.2
RefSeq:XP_010663135.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:8527810..8532530

Molecular Weight (calculated)

41469.2 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.845

Length

368 amino acids

Sequence
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSGWRRAEE EVDLGFWKRA LDSRNSISSM TKPDSCFELS LSNPRATSES NNSNHFHLLQ NGNTNLLHSF QQSQYPHHHH
101: HQHQLHHQLF QQQQGFSQEL GFLRPIRGIP VYQNPPSFPF AQQPLDSSIA SSTTTNTAAT TTGSSPFQSH HQGLIRSRFL SRFPAKRSMR APRMRWTTTL
201: HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL QMYRTVKTTD RAAASSGQSD VYENGSSGDT SEDVMFDIQN PRKSELSIQQ GRPNVHQEKD
301: YHGLWSNSSR EAWLHGKQRD SGGNTPTLEE DMDPKCLSYE RISDVSSSNL SGTSPKKPNL EFTLGRSH

Best Arabidopsis Sequence Match ( AT1G32240.1 )
(BLAST)

001: MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSSLVSNS TSKTINHPFQ DLSLSNISHH QQQQQHHHPQ LLPNCNSSNI
101: LTSFQFPTQQ QQQHLQGFLA HDLNTHLRPI RGIPLYHNPP PHHHPHRPPP PCFPFDPSSL IPSSSTSSPA LTGNNNSFNT SSVSNPNYHN HHHQTLNRAR
201: FMPRFPAKRS MRAPRMRWTT TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT TDKAAASSGQ SDVYENGSSG DNNSDDWMFD
301: MNRKSRDSEE LTNPLEKSNG LWTNSSGEAR LHGKLIDNVA EIMLPSEKEL DGKCSSYERI SSEEMSSSSI SGTSPFKPNL EFTLGRSH

Arabidopsis Description

KAN2Probable transcription factor KAN2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C616]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.