Factsheet for VIT_13s0067g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01380.t01	Wine grape	mitochondrion	11.09	68.42
VIT_08s0058g00250.t01	Wine grape	nucleus	15.56	62.93
VIT_12s0028g00980.t01	Wine grape	nucleus	9.17	59.72
VIT_00s1624g00010.t01	Wine grape	nucleus	13.01	49.59
Solyc06g051060.2.1	Tomato	nucleus	26.01	48.03
VIT_06s0004g07000.t01	Wine grape	nucleus	17.06	45.2
PGSC0003DMT400077217	Potato	nucleus	35.39	43.57
Os11t0106100-00	Rice	nucleus	16.63	36.62
VIT_12s0028g02080.t01	Wine grape	nucleus	17.7	34.3
GSMUA_Achr7P22410_001	Banana	nucleus	23.24	32.83
TraesCS5D01G158300.1	Wheat	nucleus	22.39	32.41
TraesCS5A01G153000.1	Wheat	nucleus	22.17	31.9
TraesCS5B01G151800.1	Wheat	nucleus	22.39	31.16
EES15503	Sorghum	nucleus	23.03	29.51
EES09087	Sorghum	nucleus	22.81	29.48
TraesCS4A01G180900.1	Wheat	nucleus	20.68	28.45
TraesCS4D01G131500.1	Wheat	nucleus	20.26	27.86
Zm00001d005087_P001	Maize	nucleus	20.26	27.3
TraesCS4B01G136900.1	Wheat	nucleus	19.62	27.14
Os12t0105600-01	Rice	nucleus	17.7	26.43
VIT_01s0137g00050.t01	Wine grape	nucleus	16.63	25.74
VIT_16s0039g01900.t01	Wine grape	nucleus	11.51	16.72
VIT_18s0001g11390.t01	Wine grape	nucleus	11.73	16.72
VIT_02s0012g01940.t01	Wine grape	nucleus	12.58	16.03
VIT_04s0043g00340.t01	Wine grape	nucleus	12.37	12.42

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100263821	wikigene:100263821	MapMan:35.1	ProteinID:CCB49847	ProteinID:CCB49847.1
UniProt:F6HCA9	EMBL:FN595514	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	EntrezGene:LOC100263821	wikigene:LOC100263821	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb	SUPFAM:SSF46689	SignalP:SignalP-noTM
TIGRFAMs:TIGR01557	UniParc:UPI0002107F09	ArrayExpress:VIT_13s0067g01500	EnsemblPlantsGene:VIT_13s0067g01500	EnsemblPlants:VIT_13s0067g01500.t01	RefSeq:XP_002273049
RefSeq:XP_002273049.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:-:838418..844898

Molecular Weight (calculated)

53087.6 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.743

Length

469 amino acids

Sequence
(BLAST)

001: MYYYYLLFIV AVLVYHISNQ PLHDLLGRKG KIGQKKCYLR VNLVTIRSFS KREKSFSTCQ GLGFQFPNAV EPCPATALVV FFFFFGLRIV REKMKEMKGA
101: GDSSTEGSKT TSFSNQEGEE GEEEEVDEYK KTKNGGSSSN STVEESERKA GSGSVRRYVR SKMPRLRWTP DLHLCFLHAV ERLGGQDRAT PKLVLQLMDI
201: KGLSISHVKS HLQMYRSKKI DDPNQVMMEQ GLFIEGGDHH IYKLSHLPML QSFNRRPDTS GFRYDSASAS WRASMANQTY SPYRGGDASD RSKNGGYSSV
301: SERIFRSNKG SSVLNYEFHV GNSSFNGQAT WNNAHHTREE FQLYSQSHGS WRSQIRPSSI QSNYLQPQVL ESRKQQVNRL NNPPPPQENQ KTMLKRKSSD
401: SNFDLDLNLS LKPAPKSHDH HLEKMDSTEI DSSLSLSLFS PPPSKLSRVK EGDGSRKHAE GASTLDLTL

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.