CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09087	Sorghum	nucleus	87.98	88.71
Zm00001d005087_P001	Maize	nucleus	55.46	58.33
TraesCS5A01G153000.1	Wheat	nucleus	45.08	50.61
TraesCS5D01G158300.1	Wheat	nucleus	44.26	50.0
VIT_08s0058g00250.t01	Wine grape	nucleus	15.57	49.14
TraesCS4A01G180900.1	Wheat	nucleus	45.63	48.97
TraesCS5B01G151800.1	Wheat	nucleus	44.81	48.66
TraesCS4D01G131500.1	Wheat	nucleus	45.08	48.39
TraesCS4B01G136900.1	Wheat	nucleus	44.26	47.79
Solyc09g005030.1.1	Tomato	nucleus	17.49	43.84
Os11t0106100-00	Rice	nucleus	23.77	40.85
VIT_06s0004g07000.t01	Wine grape	nucleus	19.4	40.11
Os12t0105600-01	Rice	nucleus	29.51	34.39
Solyc10g076460.1.1	Tomato	nucleus	25.14	30.46
GSMUA_Achr7P22410_001	Banana	nucleus	27.6	30.42
PGSC0003DMT400041071	Potato	nucleus	24.86	30.13
Solyc06g051060.2.1	Tomato	nucleus	20.49	29.53
KRH75999	Soybean	nucleus	26.5	28.28
KRH49433	Soybean	nucleus	28.14	28.14
KRH65638	Soybean	nucleus	26.5	28.03
PGSC0003DMT400068508	Potato	nucleus	24.86	27.83
KRH00305	Soybean	nucleus	27.6	27.37
Bra000180.1-P	Field mustard	nucleus	27.87	26.22
CDY07612	Canola	nucleus	27.87	26.02
CDY52431	Canola	nucleus	27.6	25.96
PGSC0003DMT400077217	Potato	nucleus	26.5	25.46
CDX74803	Canola	nucleus	26.5	25.26
Bra004973.1-P	Field mustard	nucleus	27.6	24.82
CDY18860	Canola	nucleus	27.32	24.57
CDY07070	Canola	nucleus	27.6	24.28
AT2G40260.1	Thale cress	nucleus	26.78	23.9
CDX93206	Canola	nucleus	27.05	23.68
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	29.51	23.03
OQU76857	Sorghum	nucleus	15.85	22.66
KXG31083	Sorghum	nucleus	17.49	20.0
EES11274	Sorghum	nucleus	16.94	19.87
EES04827	Sorghum	nucleus	28.69	19.77
OQU76531	Sorghum	nucleus	26.78	19.14
KXG40258	Sorghum	nucleus	18.31	16.5
EES13398	Sorghum	nucleus	14.75	14.36
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	14.48	14.32
OQU79478	Sorghum	nucleus	17.76	14.07
EER91215	Sorghum	nucleus	16.39	14.05
EER93393	Sorghum	mitochondrion, plastid	13.93	13.35
KXG25180	Sorghum	nucleus	17.21	13.26
Bra017021.1-P	Field mustard	nucleus	13.11	13.19
KXG35581	Sorghum	nucleus	16.39	11.47

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	UniProt:C5YQ15	EnsemblPlants:EES15503	ProteinID:EES15503	ProteinID:EES15503.2
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF2	InterPro:SANT/Myb
EnsemblPlantsGene:SORBI_3008G004200	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0003C70856	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:-:382772..386204

Molecular Weight (calculated)

40270.6 Da

IEP (calculated)

6.968

GRAVY (calculated)

-0.764

Length

366 amino acids

Sequence
(BLAST)

001: MEKDSSKGFD DESSADHQVL PSVGDGEGDD AGGADDVPRA GHDGSSSNSS TVELDEAGGD SGRKAAGASP SSVRPYVRSK NPRLRWTPEL HLCFLRAVDR
101: LGGQDRATPK LVLQLMNVKG LSIGHVKSHL QMYRSKKIDD SGQVVGNTGS WRDLHHQLHD GGQAYNFGHL SLHHGQTGAS TILSARFGAW PHWNNFHDPS
201: YLLHSRHLLG SKPYYSSTSE ADAFLRTRAQ YTARATSSTP ACTLQRCLTY QNDQFIMNHH QRRLLHNEDN IHHDPLDLEL ALDIGPSRDK RIKRSLGCSW
301: GRHQEEENVE NQEVESATDD TQLSLSLLPS PSSVRTSSGG HHKVLGLNME KGTTHPTRTS TLDLTI

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.