CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
plastid 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034181_P001	Maize	plastid	78.01	76.41
Zm00001d013187_P001	Maize	plastid	77.49	76.29
Os03t0766500-01	Rice	mitochondrion	67.54	65.82
TraesCS5D01G412800.1	Wheat	mitochondrion, plastid	62.57	63.4
TraesCS5A01G402800.1	Wheat	mitochondrion, plastid	62.04	62.7
TraesCS5B01G407600.1	Wheat	plastid	62.04	62.2
HORVU5Hr1G097900.4	Barley	mitochondrion, plastid	62.04	61.72
GSMUA_Achr4P23160_001	Banana	nucleus, plastid	24.08	33.82
EER91215	Sorghum	nucleus	33.77	30.21
KXG30956	Sorghum	cytosol, nucleus, peroxisome, plastid	27.23	28.11
EES13398	Sorghum	nucleus	25.65	26.06
OQU79478	Sorghum	nucleus	30.1	24.89
OQU76857	Sorghum	nucleus	13.61	20.31
KXG25180	Sorghum	nucleus	24.87	20.0
KXG35581	Sorghum	nucleus	25.92	18.93
EES11274	Sorghum	nucleus	11.78	14.42
KXG31083	Sorghum	nucleus	11.78	14.06
EES09087	Sorghum	nucleus	13.35	14.05
EES15503	Sorghum	nucleus	13.35	13.93
KXG40258	Sorghum	nucleus	13.35	12.56
OQU76531	Sorghum	nucleus	16.49	12.3
EES04827	Sorghum	nucleus	15.45	11.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EntrezGene:8086186	UniProt:C5WZ98	EnsemblPlants:EER93393	ProteinID:EER93393
ProteinID:EER93393.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	InterPro:Homeobox-like_sf
InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF6	InterPro:SANT/Myb	EnsemblPlantsGene:SORBI_3001G077800
SUPFAM:SSF46689	unigene:Sbi.21091	TIGRFAMs:TIGR01557	UniParc:UPI0001A82CB5	RefSeq:XP_002466395.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:5951856..5958433

Molecular Weight (calculated)

38890.4 Da

IEP (calculated)

7.830

GRAVY (calculated)

-0.086

Length

382 amino acids

Sequence
(BLAST)

001: MLQRNLPNLC LQISPPAASS AVVASDAPVA ASAKPPPTQP ISTATYAEGS GEVGFFANPS PGAEPPGLSL GLATPALGDN AAGRRGHHLQ PQGCAFKRAA
101: ARASLPAAGS KRSARAPRMR WTTALHARFV HAVELLGGHE RATPKSVMEL MNVKDLTLAH VKSHLQMYRT VKSTDRSLHT ATGEALPLQR TAATGMEAAA
201: AAAAGGGGGG AGGGVIMVPV PAACDDMVGI CSSPSAGSAP PAMATTSAAH FLCAPAATTA PLAAAPSPPP PIPPRSRTTD HAAAVPEKGV AIVDSLHRPV
301: LEDTHQAAQE KANNGQLPMG LHGCVDLLDP MATNCSSPAS SSPSLASLEQ LTADMYAPNL EISLGRQDWS MDRPEGLCLK YL

Best Arabidopsis Sequence Match ( AT5G42630.1 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.