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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d041376_P001 Maize nucleus 26.41 79.22
Zm00001d030911_P001 Maize cytosol 28.14 73.03
EER91215 Sorghum nucleus 39.18 42.39
GSMUA_Achr10P... Banana nucleus 16.67 36.84
HORVU5Hr1G017410.10 Barley nucleus 27.27 36.63
TraesCS5D01G075600.1 Wheat nucleus 26.62 35.86
GSMUA_Achr4P32400_001 Banana plastid 19.48 35.86
TraesCS5A01G064700.1 Wheat nucleus 27.06 35.82
TraesCS5B01G068000.1 Wheat nucleus 25.97 34.78
EER93393 Sorghum mitochondrion, plastid 24.89 30.1
KXG30956 Sorghum cytosol, nucleus, peroxisome, plastid 20.78 25.95
EES13398 Sorghum nucleus 18.61 22.87
KXG25180 Sorghum nucleus 21.0 20.42
KXG35581 Sorghum nucleus 21.21 18.74
EES15503 Sorghum nucleus 14.07 17.76
OQU76857 Sorghum nucleus 9.52 17.19
EES09087 Sorghum nucleus 13.2 16.8
EES11274 Sorghum nucleus 10.61 15.71
KXG31083 Sorghum nucleus 10.82 15.62
KXG40258 Sorghum nucleus 12.34 14.04
OQU76531 Sorghum nucleus 14.29 12.89
EES04827 Sorghum nucleus 14.72 12.81
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.2.3UniProt:A0A1Z5R6T9GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:Homeobox-like_sfInterPro:Myb_dom_plantsEnsemblPlants:OQU79478ProteinID:OQU79478ProteinID:OQU79478.1PFAM:PF00249
PANTHER:PTHR31496PANTHER:PTHR31496:SF12InterPro:SANT/MybEnsemblPlantsGene:SORBI_3008G149650SUPFAM:SSF46689TIGRFAMs:TIGR01557
UniParc:UPI000B424D03SEG:seg::::
Description
hypothetical protein
Coordinates
chr8:+:58270554..58279033
Molecular Weight (calculated)
48986.2 Da
IEP (calculated)
7.029
GRAVY (calculated)
-0.584
Length
462 amino acids
Sequence
(BLAST)
001: MSTTGSAGVP TTTTPPDLSL HISPPSPPAG GVKMPPEPRL MLGLELDDDD TMAAASKKVD DAAAVNEHNL QVQRLRLHHQ PSQTAHGFKK NSPGGGGGAR
101: RSSRAPRMRW TTALHAHFVH AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KGTDRSCVAG PGHHQARDMV LLRTGVGEGD GFDVFNSNNS
201: VNTIPTFNNN TDRRSRSPGE QQQQAVDRHQ DATAAASACA WIHQVQQQQQ QLPAQQQSCC SNEVIMLQAS PCRRRLPAPY SNGLIVVPAD EPASTDGNGL
301: LMTTTTEQRQ QQGLKKVGDE HVDRHHGEDD AAVAVHHLVD EADHDHAGSG GGGGVQRRRR PSSSSPNNTS GSSGDTASTS EWLHQQYCSD GGGGAGMSVR
401: VLALGLGVGP PATATATATP PSLEMSLGRQ GWQTMVEQCG VGGEFESSPS AAAKELTLLR CL
Best Arabidopsis Sequence Match ( AT5G42630.2 )
(BLAST)
001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRL LFIYIFIFVK FCI
Arabidopsis Description
KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.