Factsheet for TraesCS5B01G068000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G075600.1	Wheat	nucleus	90.72	91.25
TraesCS5A01G064700.1	Wheat	nucleus	90.14	89.11
HORVU5Hr1G017410.10	Barley	nucleus	83.77	84.01
Zm00001d041376_P001	Maize	nucleus	21.16	47.4
Zm00001d030911_P001	Maize	cytosol	21.74	42.13
GSMUA_Achr4P32400_001	Banana	plastid	29.28	40.24
GSMUA_Achr10P...	Banana	nucleus	23.77	39.23
TraesCS4B01G072500.1	Wheat	nucleus	33.04	30.73
TraesCS6B01G012800.1	Wheat	nucleus	26.96	27.93
TraesCS5B01G407600.1	Wheat	plastid	28.99	26.25
OQU79478	Sorghum	nucleus	34.78	25.97
TraesCS6B01G293700.1	Wheat	nucleus	26.38	25.63
TraesCS7B01G200700.1	Wheat	nucleus, plastid	25.51	25.36
TraesCS5B01G201900.1	Wheat	nucleus, plastid	29.28	22.39
TraesCS7B01G372200.1	Wheat	nucleus	13.33	18.78
TraesCS7B01G372000.1	Wheat	nucleus	13.33	18.4
TraesCS7B01G372100.1	Wheat	nucleus	12.75	18.33
TraesCS6B01G270800.1	Wheat	nucleus	15.07	16.35
TraesCS2B01G420900.1	Wheat	mitochondrion, nucleus	13.62	16.04
TraesCS5B01G151800.1	Wheat	nucleus	15.36	15.73
TraesCS4B01G136900.1	Wheat	nucleus	14.78	15.04
TraesCS1B01G216600.1	Wheat	nucleus	14.49	14.2
TraesCS4B01G323600.1	Wheat	nucleus	15.65	14.1
TraesCS7B01G238000.1	Wheat	nucleus	17.97	11.83
TraesCS6B01G138200.1	Wheat	nucleus	17.68	11.55

Protein Annotations

EnsemblPlants:TraesCS5B01G068000.1	EnsemblPlantsGene:TraesCS5B01G068000	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	InterPro:SANT/Myb	PANTHER:PTHR31496	PANTHER:PTHR31496:SF12
PFAM:PF00249	SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:

Description

No Description!

Coordinates

chr5B:+:77582791..77587979

Molecular Weight (calculated)

37026.5 Da

IEP (calculated)

7.441

GRAVY (calculated)

-0.588

Length

345 amino acids

Sequence
(BLAST)

001: MSSPPPPSLP EACSITKAVA PDLSLHISPP SPGTAVGDNG EVRLWLHEAA AKRHRGLEEM LHQPNKAHAF KKSSCPAVGG GAVARPAAGG RKRSSRAPRM
101: RWTTTLHAHF VRAVELLGGH ERATPKSVLE LMNVKDLTLA HVKSHLQMYR TVKSTDRSCV AGHGQTRDMG FLRRVVAGDE LINGFDGFNS NMVNTTSNNT
201: TPRGSESPAG EQGHHDAWGT QTAAATTTMV PPYLTTSESH DNEHIMPENG MARPAGPRRG RSSPNNTSSS GSDDVDESES FGWLALTRRC SDEDGDGDCA
301: GDRVLQDAAM VMAPSLEMRL GRQGWEQMEP SASASKELTP ILKCL

Best Arabidopsis Sequence Match ( AT5G42630.1 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRA SWSSTKEVSR SISTQAYSHL GTTHHTKDNE EKEDTNIHLN LDFTLGRPSW GMEYAEPSSD LTLLKC

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.