Factsheet for HORVU5Hr1G017410.10

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G075600.1	Wheat	nucleus	85.17	85.42
TraesCS5B01G068000.1	Wheat	nucleus	84.01	83.77
TraesCS5A01G064700.1	Wheat	nucleus	84.88	83.67
Zm00001d041376_P001	Maize	nucleus	21.8	48.7
Zm00001d030911_P001	Maize	cytosol	22.09	42.7
GSMUA_Achr4P32400_001	Banana	plastid	28.49	39.04
GSMUA_Achr10P...	Banana	nucleus	23.26	38.28
HORVU4Hr1G012040.5	Barley	nucleus	34.88	32.17
HORVU7Hr1G107500.1	Barley	mitochondrion	6.4	29.33
HORVU7Hr1G070420.2	Barley	nucleus	13.95	28.74
OQU79478	Sorghum	nucleus	36.63	27.27
HORVU5Hr1G097900.4	Barley	mitochondrion, plastid	30.23	27.08
HORVU6Hr1G000410.1	Barley	nucleus	25.87	27.05
HORVU5Hr1G060310.22	Barley	nucleus	29.07	22.52
HORVU6Hr1G064920.1	Barley	mitochondrion	13.08	19.07
HORVU0Hr1G016420.1	Barley	mitochondrion	13.08	19.07
HORVU7Hr1G107680.8	Barley	nucleus	13.37	17.62
HORVU1Hr1G052170.2	Barley	nucleus	13.08	17.58
HORVU7Hr1G107670.1	Barley	nucleus	12.5	17.34
HORVU2Hr1G095530.2	Barley	nucleus	13.95	16.0
HORVU4Hr1G082560.1	Barley	plastid	16.57	14.92
HORVU7Hr1G107630.5	Barley	mitochondrion	11.34	14.39
HORVU6Hr1G019650.5	Barley	nucleus	18.02	12.92
HORVU7Hr1G080530.3	Barley	nucleus	17.44	11.74

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	UniProt:A0A287QH60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:HORVU5Hr1G017410	EnsemblPlants:HORVU5Hr1G017410.10	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496
PANTHER:PTHR31496:SF12	InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000B47F95C	SEG:seg

Description

No Description!

Coordinates

chrchr5H:-:67520272..67533449

Molecular Weight (calculated)

36839.6 Da

IEP (calculated)

8.520

GRAVY (calculated)

-0.584

Length

344 amino acids

Sequence
(BLAST)

001: MNTPPPPPLP EACSITTAIP PDLSLHSPPS PCPAVGNEGE VRLGLHEAAA KRHRGLEEVL HQPNNAHGFK KSSCPAAGGA VARPAAGGRK RSSRAPRMRW
101: TTALHAHFVR AVELLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KGTDRSCVAA GHGQTRGMGI LRRVVAGDEL INGFDGFNGN MVNTTSSNTT
201: PRRSESPAGG QDHHDAWRRQ AAAPAAAMVP PYLTTSEPHD HEHIMPENGM APPAAPRRRK PSASNTSSSS SDDVDGTESF GCLALPPRRY DDDGHGDCAR
301: DRGLHDVAMV MAPSLEMRLG RQGWEQMEPS ASASKELTPI LKCL

Best Arabidopsis Sequence Match ( AT5G42630.2 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRL LFIYIFIFVK FCI

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.