Factsheet for TraesCS5D01G075600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G068000.1	Wheat	nucleus	91.25	90.72
TraesCS5A01G064700.1	Wheat	nucleus	91.25	89.68
HORVU5Hr1G017410.10	Barley	nucleus	85.42	85.17
Zm00001d041376_P001	Maize	nucleus	21.57	48.05
Zm00001d030911_P001	Maize	cytosol	21.87	42.13
GSMUA_Achr4P32400_001	Banana	plastid	28.86	39.44
GSMUA_Achr10P...	Banana	nucleus	23.62	38.76
TraesCS4D01G071300.1	Wheat	nucleus	33.82	31.27
TraesCS5D01G412800.1	Wheat	mitochondrion, plastid	30.61	27.85
OQU79478	Sorghum	nucleus	35.86	26.62
TraesCS6D01G011600.1	Wheat	nucleus	25.66	26.51
TraesCS7D01G294400.1	Wheat	nucleus	25.36	25.07
TraesCS6D01G248300.1	Wheat	cytosol, nucleus, peroxisome, plastid	25.95	24.93
TraesCS5D01G209600.1	Wheat	nucleus, plastid	28.86	22.05
TraesCS7D01G457400.1	Wheat	nucleus	13.7	18.73
TraesCS7D01G457600.1	Wheat	nucleus	13.12	18.22
TraesCS7D01G457300.1	Wheat	nucleus	12.83	17.6
TraesCS6D01G236000.1	Wheat	mitochondrion	15.16	17.11
TraesCS7D01G457500.1	Wheat	nucleus	12.24	17.07
TraesCS5D01G158300.1	Wheat	nucleus	14.87	15.74
TraesCS4D01G131500.1	Wheat	nucleus	15.45	15.54
TraesCS2D01G400100.2	Wheat	mitochondrion, nucleus	13.12	15.41
TraesCS1D01G205800.1	Wheat	nucleus	14.29	13.92
TraesCS6D01G098200.1	Wheat	nucleus	18.66	13.47
TraesCS4D01G320400.1	Wheat	nucleus	16.04	12.82
TraesCS7D01G334100.1	Wheat	nucleus	17.49	11.61

Protein Annotations

EnsemblPlants:TraesCS5D01G075600.1	EnsemblPlantsGene:TraesCS5D01G075600	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Myb_dom_plants	InterPro:SANT/Myb	PANTHER:PTHR31496	PANTHER:PTHR31496:SF12
PFAM:PF00249	SEG:seg	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	MapMan:15.5.2.3	:

Description

No Description!

Coordinates

chr5D:-:74760347..74764949

Molecular Weight (calculated)

37243.1 Da

IEP (calculated)

8.272

GRAVY (calculated)

-0.591

Length

343 amino acids

Sequence
(BLAST)

001: MSTPPPPLPE ACSITMAVAP DLSLHISPPS PDTAVGHNGE VRLGLHESAA KRHRGLEEML HQPNKAHGFK KSSCPDVGGG AVARPAAGGR KRSSRAPRMR
101: WTTALHAHFV RAVELLGGHE RATPKSVLEL MNVKDLTLAH VKSHLQMYRT VKGTDRSCVA GHGQTRDMGF LRRVVAGDEL INGFDGFNSN MVNTTSNYTT
201: PRRSESPAGE QGHHDAWRTQ AAAAAATTTI MVPPYLTTSE PHDNEHIMPE NGMARPAAPR RGRPSPNNTS SSGSDDVDET ESFGWLALTR RRYDEDCAGD
301: RVLQDTAMVM APSLEMRLGR QGWEQMEPSA SASKELTPIV RCL

Best Arabidopsis Sequence Match ( AT5G42630.2 )
(BLAST)

001: MMMLESRNSM RASNSVPDLS LQISLPNYHA GKPLHGGDRS STSSDSGSSL SDLSHENNFF NKPLLSLGFD HHHQRRSNMF QPQIYGRDFK RSSSSMVGLK
101: RSIRAPRMRW TSTLHAHFVH AVQLLGGHER ATPKSVLELM NVKDLTLAHV KSHLQMYRTV KCTDKGSPGE GKVEKEAEQR IEDNNNNEEA DEGTDTNSPN
201: SSSVQKTQRL LFIYIFIFVK FCI

Arabidopsis Description

KAN4Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.