Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G153000.1 | Wheat | nucleus | 93.83 | 93.25 |
| TraesCS5B01G151800.1 | Wheat | nucleus | 91.98 | 88.43 |
| TraesCS4D01G131500.1 | Wheat | nucleus | 60.8 | 57.77 |
| VIT_08s0058g00250.t01 | Wine grape | nucleus | 16.98 | 47.41 |
| EES09087 | Sorghum | nucleus | 50.31 | 44.9 |
| EES15503 | Sorghum | nucleus | 50.0 | 44.26 |
| Solyc09g005030.1.1 | Tomato | nucleus | 19.44 | 43.15 |
| Os11t0106100-00 | Rice | nucleus | 26.85 | 40.85 |
| Zm00001d005087_P001 | Maize | nucleus | 42.9 | 39.94 |
| VIT_06s0004g07000.t01 | Wine grape | nucleus | 21.3 | 38.98 |
| Os12t0105600-01 | Rice | nucleus | 30.56 | 31.53 |
| Solyc06g051060.2.1 | Tomato | nucleus | 23.15 | 29.53 |
| Solyc10g076460.1.1 | Tomato | nucleus | 27.16 | 29.14 |
| GSMUA_Achr7P22410_001 | Banana | nucleus | 29.63 | 28.92 |
| PGSC0003DMT400041071 | Potato | nucleus | 26.54 | 28.48 |
| KRH75999 | Soybean | nucleus | 29.63 | 27.99 |
| PGSC0003DMT400068508 | Potato | nucleus | 27.78 | 27.52 |
| KRH65638 | Soybean | nucleus | 29.01 | 27.17 |
| CDY52431 | Canola | nucleus | 32.41 | 26.99 |
| CDX74803 | Canola | nucleus | 31.79 | 26.82 |
| Bra000180.1-P | Field mustard | nucleus | 32.1 | 26.74 |
| CDY07612 | Canola | nucleus | 32.1 | 26.53 |
| Bra004973.1-P | Field mustard | nucleus | 33.02 | 26.29 |
| PGSC0003DMT400077217 | Potato | nucleus | 30.86 | 26.25 |
| CDY07070 | Canola | nucleus | 33.64 | 26.2 |
| CDY18860 | Canola | nucleus | 32.41 | 25.8 |
| AT2G40260.1 | Thale cress | nucleus | 32.1 | 25.37 |
| CDX93206 | Canola | nucleus | 32.72 | 25.36 |
| KRH49433 | Soybean | nucleus | 28.09 | 24.86 |
| KRH00305 | Soybean | nucleus | 28.09 | 24.66 |
| TraesCS7D01G457500.1 | Wheat | nucleus | 18.52 | 24.39 |
| TraesCS7D01G457300.1 | Wheat | nucleus | 18.52 | 24.0 |
| TraesCS7D01G457600.1 | Wheat | nucleus | 18.21 | 23.89 |
| TraesCS7D01G457400.1 | Wheat | nucleus | 18.21 | 23.51 |
| VIT_13s0067g01500.t01 | Wine grape | extracellular, vacuole | 32.41 | 22.39 |
| TraesCS2D01G400100.2 | Wheat | mitochondrion, nucleus | 19.44 | 21.58 |
| TraesCS6D01G236000.1 | Wheat | mitochondrion | 19.44 | 20.72 |
| TraesCS6D01G098200.1 | Wheat | nucleus | 29.94 | 20.42 |
| TraesCS1D01G205800.1 | Wheat | nucleus | 21.3 | 19.6 |
| TraesCS7D01G334100.1 | Wheat | nucleus | 28.7 | 17.99 |
| TraesCS6D01G011600.1 | Wheat | nucleus | 17.28 | 16.87 |
| Bra017021.1-P | Field mustard | nucleus | 18.52 | 16.48 |
| TraesCS4D01G071300.1 | Wheat | nucleus | 18.21 | 15.9 |
| TraesCS4D01G320400.1 | Wheat | nucleus | 20.37 | 15.38 |
| TraesCS7D01G294400.1 | Wheat | nucleus | 16.36 | 15.27 |
| TraesCS6D01G248300.1 | Wheat | cytosol, nucleus, peroxisome, plastid | 16.67 | 15.13 |
| TraesCS5D01G075600.1 | Wheat | nucleus | 15.74 | 14.87 |
| TraesCS5D01G412800.1 | Wheat | mitochondrion, plastid | 15.74 | 13.53 |
| TraesCS5D01G209600.1 | Wheat | nucleus, plastid | 16.67 | 12.03 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 |
| PFscan:PS51294 | PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| EnsemblPlantsGene:TraesCS5D01G158300 | EnsemblPlants:TraesCS5D01G158300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:+:246302970..246304810
Molecular Weight (calculated)
35732.9 Da
IEP (calculated)
8.659
GRAVY (calculated)
-0.710
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MEASKGGDGS SGASPSNDDS TVEEEGASRQ EQEDACRGNS LSSSSVRPYV RSKNPRLRWT PELHHCFVRA IHRLGGQDRA TPKLVLQLMN VRGLSIGHVK
101: SHLQMYRSKK IDDSGQVIGH LPLPHAFHHR QSGAGTMLSR FGAAAWPPWR SFHEPYWAHG RPFLGSKTYN SLEAEAEAAF LRSRAQHVAR AASSNPGLMM
201: QSGCPSRNDH HTMNHQPKRL LQLTVRNDDD THVLLDLDLG LSLGLPVPMR EAKRRRSGCG WVKEGPDEKG ADEEQVDETS TATMLSLSLF SPRDAPRKMS
301: STSASDHAVD EHATRRASTL DLTI
101: SHLQMYRSKK IDDSGQVIGH LPLPHAFHHR QSGAGTMLSR FGAAAWPPWR SFHEPYWAHG RPFLGSKTYN SLEAEAEAAF LRSRAQHVAR AASSNPGLMM
201: QSGCPSRNDH HTMNHQPKRL LQLTVRNDDD THVLLDLDLG LSLGLPVPMR EAKRRRSGCG WVKEGPDEKG ADEEQVDETS TATMLSLSLF SPRDAPRKMS
301: STSASDHAVD EHATRRASTL DLTI
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.