Factsheet for Bra000180.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07612	Canola	nucleus	100.0	99.23
CDY52431	Canola	nucleus	95.37	95.37
Bra004973.1-P	Field mustard	nucleus	80.72	77.15
AT2G40260.1	Thale cress	nucleus	79.18	75.12
Bra017021.1-P	Field mustard	nucleus	67.61	72.25
Bra018498.1-P	Field mustard	mitochondrion	11.31	61.97
Os11t0106100-00	Rice	nucleus	20.05	36.62
Bra005124.1-P	Field mustard	nucleus	29.31	33.83
Bra026202.1-P	Field mustard	nucleus	16.97	33.0
TraesCS5A01G153000.1	Wheat	nucleus	26.99	32.21
TraesCS5D01G158300.1	Wheat	nucleus	26.74	32.1
TraesCS5B01G151800.1	Wheat	nucleus	26.99	31.16
TraesCS4A01G180900.1	Wheat	nucleus	26.99	30.79
TraesCS4D01G131500.1	Wheat	nucleus	26.74	30.5
GSMUA_Achr7P22410_001	Banana	nucleus	25.45	29.82
TraesCS4B01G136900.1	Wheat	nucleus	25.71	29.5
Bra026818.1-P	Field mustard	nucleus	17.99	29.17
Bra029503.1-P	Field mustard	mitochondrion	12.85	29.07
EES09087	Sorghum	nucleus	26.74	28.65
Zm00001d005087_P001	Maize	nucleus	25.45	28.45
Os12t0105600-01	Rice	nucleus	22.88	28.34
EES15503	Sorghum	nucleus	26.22	27.87
Bra024836.1-P	Field mustard	nucleus	18.25	27.41
Bra026618.1-P	Field mustard	nucleus	18.25	27.1
Bra021038.1-P	Field mustard	plastid	10.8	23.46
Bra000270.1-P	Field mustard	nucleus	14.91	20.14
Bra017425.1-P	Field mustard	nucleus	9.0	17.68
Bra040176.1-P	Field mustard	nucleus	13.11	16.09
Bra008613.1-P	Field mustard	nucleus	11.83	15.81
Bra023254.1-P	Field mustard	nucleus	14.4	15.3
Bra033844.1-P	Field mustard	nucleus	14.65	14.54
Bra023570.1-P	Field mustard	cytosol	13.37	13.07
Bra035311.1-P	Field mustard	nucleus	14.65	9.13
Bra006360.1-P	Field mustard	nucleus	10.28	5.46

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra000180	EnsemblPlants:Bra000180.1	EnsemblPlants:Bra000180.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4C7K2	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025402CB	SEG:seg	:	:

Description

AT2G40260 (E=1e-159) | myb family transcription factor

Coordinates

chrA03:-:9752691..9754265

Molecular Weight (calculated)

43916.1 Da

IEP (calculated)

9.536

GRAVY (calculated)

-0.972

Length

389 amino acids

Sequence
(BLAST)

001: MRSSSQSSEN SKKTDNKDEE EDEEERSADQ SPSKNSYLEE NGSHHHNNDQ IKKSGGSVRP YNRSKTPRLR WTPELHICFL QAVERLGGPD RATPKLVLQL
101: MNVKGLSIGH VKSHLQMYRS KKIDDTNQGD QRFSFEHGAG YTYNLRQLPM LQSFDQSPTS LGYGGGSWTG HRQHVYHSPW RGLTARDNTR TRQTLFGSQP
201: GERFHGVSNS ILDDKNSTVW FRINSHEAAH ANNGVGEAVP RMHRSFLEGM KTFNKSWGQS LASNPNSWTA SKPQSHIAAT LSSNQRDNPL VAEKMENVLK
301: KKRLLLSDDC NNSDKDLDLS LSFKVPRSHN NLGDCLLEEE KEHADSKGLS LSLYSSSFAK LGQIIRKEDQ NYHKKRKCSV LASPLDLTL

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.