Factsheet for Bra024836.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17617	Canola	nucleus	100.0	99.62
Bra026618.1-P	Field mustard	nucleus	81.85	80.92
AT2G02060.1	Thale cress	nucleus, plastid	74.13	75.0
Bra017425.1-P	Field mustard	nucleus	56.76	74.24
Bra026818.1-P	Field mustard	nucleus	57.92	62.5
Bra026202.1-P	Field mustard	nucleus	47.49	61.5
Bra018498.1-P	Field mustard	mitochondrion	16.6	60.56
KRG89170	Soybean	nucleus	37.45	32.99
KRH49492	Soybean	nucleus	37.84	32.67
Bra029503.1-P	Field mustard	mitochondrion	18.53	27.91
KRH36060	Soybean	nucleus	26.25	27.87
VIT_01s0137g00050.t01	Wine grape	nucleus	32.43	27.72
KRG90693	Soybean	nucleus	31.27	26.73
GSMUA_Achr11P...	Banana	nucleus	23.17	25.64
GSMUA_Achr2P11010_001	Banana	nucleus	27.03	23.97
Bra021038.1-P	Field mustard	plastid	16.22	23.46
GSMUA_Achr4P25920_001	Banana	nucleus	22.39	23.39
PGSC0003DMT400075668	Potato	nucleus	27.8	23.38
Solyc04g008480.1.1	Tomato	nucleus	26.64	23.23
GSMUA_AchrUn_...	Banana	nucleus	25.48	22.37
Bra005124.1-P	Field mustard	nucleus	27.8	21.36
GSMUA_Achr5P19200_001	Banana	nucleus	23.17	20.98
Bra000180.1-P	Field mustard	nucleus	27.41	18.25
Bra004973.1-P	Field mustard	nucleus	27.41	17.44
Bra040176.1-P	Field mustard	nucleus	19.69	16.09
Bra000270.1-P	Field mustard	nucleus	16.22	14.58
Bra008613.1-P	Field mustard	nucleus	15.83	14.09
Bra023254.1-P	Field mustard	nucleus	19.69	13.93
Bra033844.1-P	Field mustard	nucleus	20.08	13.27
Bra023570.1-P	Field mustard	cytosol	17.76	11.56
Bra017021.1-P	Field mustard	nucleus	11.58	8.24
Bra035311.1-P	Field mustard	nucleus	15.83	6.57
Bra006360.1-P	Field mustard	nucleus	11.97	4.23

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra024836	EnsemblPlants:Bra024836.1	EnsemblPlants:Bra024836.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4E7T0
InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000253F8DE	SEG:seg	:

Description

AT2G02060 (E=3e-040) | transcription factor

Coordinates

chrA06:-:23712217..23714561

Molecular Weight (calculated)

28885.8 Da

IEP (calculated)

7.925

GRAVY (calculated)

-0.751

Length

259 amino acids

Sequence
(BLAST)

001: MGTCGGRNGN DVGFNGHGGG RVRPYVRSPV PRLRWTPELH RCFLNAVDML GGQHRATPKL ILKMMDVRGL TISHVKSHLQ MYRGSKLTLG KSEESSLSSI
101: RRRQDTEEDY LHDNLSLPSR NDCLLGFHSF PLSSHSSLRG GRRENQTSQS GGGDDDDDFL HIINMEKTKE TTAFPSHQCH KKTEKEKNKW ENSGKEQEEE
201: DLSLSLSLNH HQWRSNGSSV SETSEAVSTC SAPFVFKDCF ASSPKIDLNL TLSVSLLSS

Best Arabidopsis Sequence Match ( AT2G02060.1 )
(BLAST)

001: MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS

Arabidopsis Description

Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q7X887]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.