Factsheet for GSMUA_Achr4P25920_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	68.95	57.97
GSMUA_Achr9P30700_001	Banana	mitochondrion	18.55	42.2
GSMUA_Achr5P00310_001	Banana	nucleus	14.92	41.11
GSMUA_Achr11P...	Banana	nucleus	35.89	38.03
VIT_01s0137g00050.t01	Wine grape	nucleus	39.11	32.01
GSMUA_Achr5P19200_001	Banana	nucleus	35.48	30.77
Bra026202.1-P	Field mustard	nucleus	22.58	28.0
KRG90693	Soybean	nucleus	33.87	27.72
CDX81654	Canola	nucleus	25.81	26.45
CDX82805	Canola	nucleus	25.81	26.45
PGSC0003DMT400075668	Potato	nucleus	32.66	26.3
Solyc04g008480.1.1	Tomato	nucleus	31.45	26.26
Bra026818.1-P	Field mustard	nucleus	25.4	26.25
CDY59419	Canola	nucleus	25.4	26.25
GSMUA_Achr7P03510_001	Banana	nucleus	20.56	24.76
GSMUA_Achr2P11010_001	Banana	nucleus	29.03	24.66
CDY41090	Canola	nucleus	24.19	24.29
CDY45272	Canola	nucleus	24.19	24.29
AT2G02060.1	Thale cress	nucleus, plastid	24.6	23.83
AT1G14600.1	Thale cress	nucleus	24.19	23.53
KRG89170	Soybean	nucleus	27.82	23.47
GSMUA_Achr2P06700_001	Banana	cytosol, nucleus, plastid	15.73	23.08
KRH49492	Soybean	nucleus	27.42	22.67
Bra024836.1-P	Field mustard	nucleus	23.39	22.39
CDY70922	Canola	nucleus	23.39	22.39
CDY17617	Canola	nucleus	23.39	22.31
CDY09392	Canola	nucleus	23.39	22.14
Bra026618.1-P	Field mustard	nucleus	23.39	22.14
CDY17443	Canola	nucleus	21.77	20.45
CDY04115	Canola	nucleus	21.77	19.93
GSMUA_Achr7P22410_001	Banana	nucleus	26.61	19.88
GSMUA_Achr7P00680_001	Banana	cytosol, golgi, nucleus	17.34	19.2
GSMUA_Achr1P23970_001	Banana	nucleus	15.73	19.02
GSMUA_Achr10P...	Banana	nucleus	15.32	18.18
GSMUA_Achr11P...	Banana	nucleus	17.34	18.14
GSMUA_Achr7P13880_001	Banana	nucleus	29.84	18.05
GSMUA_Achr1P22100_001	Banana	nucleus	15.73	17.81
GSMUA_Achr2P18070_001	Banana	nucleus	18.55	17.1
GSMUA_Achr9P23320_001	Banana	nucleus	15.32	16.81
GSMUA_Achr4P32400_001	Banana	plastid	16.94	16.73
GSMUA_Achr7P09370_001	Banana	nucleus	25.4	16.67
GSMUA_Achr4P23160_001	Banana	nucleus, plastid	17.74	16.18
GSMUA_Achr10P...	Banana	nucleus	17.74	15.83
GSMUA_Achr3P00380_001	Banana	nucleus	15.32	14.5
GSMUA_Achr2P13320_001	Banana	nucleus, plastid	16.13	14.49
GSMUA_AchrUn_...	Banana	nucleus	17.74	13.54
GSMUA_Achr10P...	Banana	nucleus	28.23	13.51
GSMUA_AchrUn_...	Banana	nucleus	16.53	13.1
GSMUA_AchrUn_...	Banana	nucleus	17.74	12.87
Bra017425.1-P	Field mustard	nucleus	9.68	12.12
GSMUA_Achr7P02420_001	Banana	nucleus	16.94	11.86
GSMUA_Achr8P30770_001	Banana	nucleus	16.94	11.83
KRH36060	Soybean	nucleus	11.29	11.48
GSMUA_Achr4P04510_001	Banana	nucleus	17.34	11.47
GSMUA_Achr8P22900_001	Banana	nucleus	16.94	11.14
GSMUA_Achr1P06280_001	Banana	mitochondrion, nucleus	18.15	10.9
GSMUA_AchrUn_...	Banana	nucleus	17.34	10.86
CDY04116	Canola	nucleus	8.87	10.84

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G25920_001
EnsemblPlants:GSMUA_Achr4P25920_001	EnsemblPlants:GSMUA_Achr4T25920_001	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M0SS53	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF6	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000296DF03	:	:	:

Description

MYB family transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G25920_001]

Coordinates

chr4:-:25234892..25237487

Molecular Weight (calculated)

28046.7 Da

IEP (calculated)

7.952

GRAVY (calculated)

-0.497

Length

248 amino acids

Sequence
(BLAST)

001: MGNCRRNGAV RQYIRSKVPR LKWTPELHQC FVHAIERLGG QDKATPKLVL QLMNTSGLTI SHVKSHLQMY RSTRNNMGRQ GMEIFHGRKH SCQGNDEGAD
101: EQDDLGSTQA CDPTEEFQYQ PMYSSLPLLK RARLDAQPNS KSGQCSQQIC ETVTSQYWIG NCMQTLAVDR GIKEEGISWQ RDALQTEDMA ADHPTKLKVL
201: GYMVEESDPF KVNEKSEKAF CTLLIFSPAK LLCLPSLNVS FISLLVIY

Best Arabidopsis Sequence Match ( AT2G40260.1 )
(BLAST)

001: MRSSSQNSEN SKTCLSNNIK ATTKNEEDKD EEDDEEGEED EEERSGDQSP SSNSYEEESG SHHHDQNKKN GGSVRPYNRS KTPRLRWTPE LHICFLQAVE
101: RLGGPDRATP KLVLQLMNVK GLSIAHVKSH LQMYRSKKTD EPNEGDQGFS FEHGAGYTYN LSQLPMLQSF DQRPSSSLGY GGGSWTDHRR QIYRSPWRGL
201: TTRENTRTRQ TMFSSQPGER YHGVSNSILN DKNKTISFRI NSHEGVHDNN GVAGAVPRIH RSFLEGMKTF NKSWGQSLSS NLKSSTATIP QDHIATTLNS
301: YQWENAGVAE GSENVLKRKR LLFSDDCNKS DQDLDLSLSL KVPRTHDNLG ECLLEDEVKE HDDHQDIKSL SLSLSSSGSS KLDRTIRKED QTDHKKRKIS
401: VLASPLDLTL

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SIZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.