Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017425.1-P | Field mustard | nucleus | 71.97 | 95.96 |
| CDY04115 | Canola | nucleus | 93.18 | 90.77 |
| CDY04116 | Canola | nucleus | 68.56 | 89.16 |
| CDY70922 | Canola | nucleus | 78.03 | 79.54 |
| CDY09392 | Canola | nucleus | 77.65 | 78.24 |
| CDY17617 | Canola | nucleus | 73.48 | 74.62 |
| AT2G02060.1 | Thale cress | nucleus, plastid | 71.21 | 73.44 |
| CDY69675 | Canola | cytosol, nucleus | 30.3 | 68.97 |
| CDY71094 | Canola | mitochondrion | 18.94 | 62.5 |
| CDY45272 | Canola | nucleus | 53.03 | 56.68 |
| CDY41090 | Canola | nucleus | 53.03 | 56.68 |
| CDX81654 | Canola | nucleus | 51.52 | 56.2 |
| CDX82805 | Canola | nucleus | 51.14 | 55.79 |
| CDY59419 | Canola | nucleus | 50.0 | 55.0 |
| KRG89170 | Soybean | nucleus | 36.74 | 32.99 |
| KRH49492 | Soybean | nucleus | 37.12 | 32.67 |
| CDY00733 | Canola | mitochondrion, nucleus | 16.29 | 30.28 |
| CDX94559 | Canola | mitochondrion | 17.8 | 27.17 |
| KRH36060 | Soybean | nucleus | 24.62 | 26.64 |
| CDY16660 | Canola | mitochondrion | 17.42 | 26.59 |
| CDX97319 | Canola | mitochondrion | 20.83 | 26.57 |
| KRG90693 | Soybean | nucleus | 29.92 | 26.07 |
| VIT_01s0137g00050.t01 | Wine grape | nucleus | 29.92 | 26.07 |
| GSMUA_Achr11P... | Banana | nucleus | 21.97 | 24.79 |
| PGSC0003DMT400075668 | Potato | nucleus | 28.41 | 24.35 |
| CDY69225 | Canola | mitochondrion | 15.15 | 24.24 |
| Solyc04g008480.1.1 | Tomato | nucleus | 26.89 | 23.91 |
| GSMUA_Achr2P11010_001 | Banana | nucleus | 25.38 | 22.95 |
| GSMUA_Achr4P25920_001 | Banana | nucleus | 20.45 | 21.77 |
| CDX74898 | Canola | nucleus | 27.27 | 21.05 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.11 | 20.68 |
| CDX91442 | Canola | nucleus | 26.89 | 20.29 |
| GSMUA_Achr5P19200_001 | Banana | nucleus | 21.97 | 20.28 |
| CDY42825 | Canola | nucleus | 23.86 | 19.27 |
| CDY67147 | Canola | nucleus | 23.48 | 18.96 |
| CDY52431 | Canola | nucleus | 26.89 | 18.25 |
| CDX74803 | Canola | nucleus | 25.76 | 17.71 |
| CDY07612 | Canola | nucleus | 25.76 | 17.35 |
| CDX84102 | Canola | nucleus | 17.8 | 17.34 |
| CDY68011 | Canola | nucleus | 13.64 | 17.06 |
| CDY18860 | Canola | nucleus | 25.38 | 16.46 |
| CDY54255 | Canola | nucleus | 18.56 | 16.39 |
| CDY07070 | Canola | nucleus | 25.76 | 16.35 |
| CDX93206 | Canola | nucleus | 25.38 | 16.03 |
| CDX78794 | Canola | nucleus | 18.94 | 16.03 |
| CDY23916 | Canola | nucleus | 15.91 | 15.79 |
| CDY35557 | Canola | nucleus | 19.7 | 15.57 |
| CDX93847 | Canola | nucleus | 19.7 | 15.38 |
| CDY43006 | Canola | nucleus | 19.32 | 15.0 |
| CDY28659 | Canola | nucleus | 17.05 | 14.75 |
| CDY01293 | Canola | nucleus | 19.32 | 14.74 |
| CDX69443 | Canola | nucleus | 18.56 | 12.47 |
| CDX70701 | Canola | nucleus | 18.18 | 12.47 |
| CDY67252 | Canola | nucleus | 18.56 | 12.44 |
| CDX78699 | Canola | nucleus | 18.18 | 12.44 |
| CDY38105 | Canola | nucleus | 18.18 | 12.06 |
| CDX85500 | Canola | nucleus | 18.18 | 12.03 |
| CDY02401 | Canola | nucleus | 15.91 | 6.73 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078FYM8 | UniProt:A0A078FYM8 | EnsemblPlants:CDY17443 | ProteinID:CDY17443 |
| ProteinID:CDY17443.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00095592001 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR31314 |
| PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EECADE | SEG:seg |
Description
BnaC09g20940DBnaC09g20940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYM8]
Coordinates
chrLK032073:-:381229..383720
Molecular Weight (calculated)
29679.4 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.875
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRGGKNGN ENYDGVGFNG QGGSGVRPYV RSPVPRLKWT ADLHRCFVNA VDMLGGQHRA TPKLVLKMMD VKGLTISHVK SHLQMHRGSK LTLGKPEENS
101: LFSIRRQDTE EDYLQDYLSL HIRNDCPTGF HTFSLSSHSS RGRRKEHTSE SRGGDDVDDS LHIMNLKTNE TTFPSHHFHQ NTEKETNPWH EHEHEHEQEH
201: EHEEEELSLS LSLNHHHLRS NGSSVSETSD AVSTCSAPFV NKDCFGSSPK IDLDLNLSIS LLGS
101: LFSIRRQDTE EDYLQDYLSL HIRNDCPTGF HTFSLSSHSS RGRRKEHTSE SRGGDDVDDS LHIMNLKTNE TTFPSHHFHQ NTEKETNPWH EHEHEHEQEH
201: EHEEEELSLS LSLNHHHLRS NGSSVSETSD AVSTCSAPFV NKDCFGSSPK IDLDLNLSIS LLGS
001: MGKSSGRNGN GSFNGNKFHG VRPYVRSPVP RLRWTPDLHR CFVHAVEILG GQHRATPKLV LKMMDVKGLT ISHVKSHLQM YRGGSKLTLE KPEESSSSSI
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
101: RRRQDSEEDY YLHDNLSLHT RNDCLLGFHS FPLSSHSSFR GGGGGRTKEQ QTSESGGYDD DADFLHIKKM NDTTTFLSHH FPKGTEEWRE QEHEEEEEDL
201: SLSLSLNHHH WRSNGSSVVS ETSEAAVSTC SAPFVSKDCF GSSKIDLNLS ISLLGS
Arabidopsis Description
Glycosyltransferase [Source:UniProtKB/TrEMBL;Acc:Q7X887]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.