CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67746
CDX69609
CDX70540
CDX71949
CDX72718
CDX77841
CDX78558
CDX80461
CDX85614
CDX88988
CDX89247
CDX89282
CDX90305
CDX91084
CDX92171
CDX93183
CDX95810
CDX98300
CDY00569
CDY02176
CDY05402
CDY05452
CDY06035
CDY06250
CDY06697
CDY09924
CDY10267
CDY12116
CDY22394
CDY23090
CDY26165
CDY29271
CDY29313
CDY30932
CDY52927
CDY58422
CDY65027
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	CDY06250	AT1G07310.1	21798944
AT5G16560.1	CDY06697	AT1G07310.1	21798944
AT5G16560.1	CDY09924	AT1G07310.1	21798944
AT5G16560.1	CDY10267	AT1G07310.1	21798944
AT5G16560.1	CDY26165	AT1G18400.1	21798944
AT5G16560.1	CDY65027	AT1G18400.1	21798944
AT5G16560.1	CDX93183	AT2G19650.1	21798944
AT5G16560.1	CDY52927	AT2G19650.1	21798944
AT5G16560.1	CDX92171	AT3G17860.1	21798944
AT5G16560.1	CDX95810	AT3G17860.1	21798944
AT5G16560.1	CDX77841	AT3G44720.1	21798944
AT5G16560.1	CDY30932	AT3G44720.1	21798944
AT5G16560.1	CDX67746	AT3G58500.1	21798944
AT5G16560.1	CDX71949	AT3G58500.1	21798944
AT5G16560.1	CDX88988	AT3G58500.1	21798944
AT5G16560.1	CDX98300	AT3G58500.1	21798944
AT5G16560.1	CDY00569	AT3G58500.1	21798944
AT5G16560.1	CDY06035	AT3G58500.1	21798944
AT5G16560.1	CDX89282	AT4G27060.1	21798944
AT5G16560.1	CDY29271	AT4G27060.1	21798944
AT5G16560.1	CDX89247	AT4G27460.1	21798944
AT5G16560.1	CDY29313	AT4G27460.1	21798944
AT5G16560.1	CDX72718	AT4G39050.1	21798944
AT5G16560.1	CDX90305	AT4G39050.1	21798944
AT5G16560.1	CDY12116	AT4G39050.1	21798944
AT5G16560.1	CDY22394	AT4G39050.1	21798944
AT5G16560.1	CDX69609	AT5G14070.1	21798944
AT5G16560.1	CDX70540	AT5G14070.1	21798944
AT5G16560.1	CDX78558	AT5G14070.1	21798944
AT5G16560.1	CDX85614	AT5G14070.1	21798944
AT5G16560.1	CDX91084	AT5G14070.1	21798944
AT5G16560.1	CDY58422	AT5G14070.1	21798944
AT5G16560.1	CDX80461	AT5G24660.1	21798944
AT5G16560.1	CDY05402	AT5G24660.1	21798944
AT5G16560.1	CDY05452	AT5G24660.1	21798944
AT5G16560.1	CDY69515	AT5G24660.1	21798944
AT5G16560.1	CDY02176	AT5G61010.1	21798944
AT5G16560.1	CDY23090	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85500	Canola	nucleus	96.23	95.99
CDY67252	Canola	nucleus	86.68	87.56
CDX69443	Canola	nucleus	86.18	87.28
CDX70701	Canola	nucleus	84.42	87.27
CDX78699	Canola	nucleus	84.17	86.79
AT5G16560.1	Thale cress	nucleus	83.67	82.63
CDY28659	Canola	nucleus	63.07	82.3
CDY71094	Canola	mitochondrion	10.3	51.25
CDY69225	Canola	mitochondrion	19.6	47.27
Solyc06g066340.2.1	Tomato	nucleus	29.65	40.55
CDY23916	Canola	nucleus	26.38	39.47
VIT_04s0043g00340.t01	Wine grape	nucleus	45.48	38.76
CDY68011	Canola	nucleus	20.35	38.39
CDY35557	Canola	nucleus	31.91	38.02
CDX93847	Canola	nucleus	32.16	37.87
CDX84102	Canola	nucleus	25.63	37.64
CDY43006	Canola	nucleus	31.66	37.06
CDY01293	Canola	nucleus	32.16	36.99
PGSC0003DMT400043200	Potato	nucleus	34.42	34.42
CDX78794	Canola	nucleus	26.88	34.29
GSMUA_Achr4P04510_001	Banana	nucleus	31.41	33.33
CDY54255	Canola	nucleus	24.37	32.44
Os08t0426866-00	Rice	nucleus	37.44	31.84
KRH39002	Soybean	nucleus	32.41	31.31
KRH48713	Soybean	nucleus	32.41	31.01
KXG25180	Sorghum	nucleus	36.68	30.74
Zm00001d032249_P002	Maize	plastid	34.67	28.63
CDY00733	Canola	mitochondrion, nucleus	9.3	26.06
CDY16660	Canola	mitochondrion	11.06	25.43
CDX94559	Canola	mitochondrion	10.55	24.28
CDX97319	Canola	mitochondrion	12.31	23.67
CDY59419	Canola	nucleus	12.56	20.83
CDX81654	Canola	nucleus	12.56	20.66
CDX82805	Canola	nucleus	12.56	20.66
CDY45272	Canola	nucleus	12.31	19.84
CDY41090	Canola	nucleus	12.31	19.84
CDY09392	Canola	nucleus	12.81	19.47
CDY70922	Canola	nucleus	12.56	19.3
CDY17443	Canola	nucleus	12.06	18.18
CDY17617	Canola	nucleus	11.81	18.08
CDY02401	Canola	nucleus	26.63	16.99
CDY04115	Canola	nucleus	10.8	15.87
CDX74898	Canola	nucleus	12.81	14.91
CDY67147	Canola	nucleus	12.06	14.68
CDX91442	Canola	nucleus	12.81	14.57
CDY42825	Canola	nucleus	11.81	14.37
CDX74803	Canola	nucleus	13.82	14.32
CDY07612	Canola	nucleus	14.07	14.29
CDY52431	Canola	nucleus	13.82	14.14
CDY18860	Canola	nucleus	14.07	13.76
CDY07070	Canola	nucleus	13.57	12.98
CDX93206	Canola	nucleus	13.57	12.92
CDY04116	Canola	nucleus	4.27	8.37
CDY69675	Canola	cytosol, nucleus	1.01	3.45

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	GO:A0A078HI30	UniProt:A0A078HI30	EnsemblPlants:CDY38105	ProteinID:CDY38105
ProteinID:CDY38105.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00065381001	InterPro:Homeobox-like_sf
InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF3	InterPro:SANT/Myb	SUPFAM:SSF46689
TIGRFAMs:TIGR01557	UniParc:UPI0004EB761C	SEG:seg	:	:	:

Description

BnaC02g06680DBnaC02g06680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HI30]

Coordinates

chrLK032416:+:156640..163682

Molecular Weight (calculated)

44890.9 Da

IEP (calculated)

9.434

GRAVY (calculated)

-0.985

Length

398 amino acids

Sequence
(BLAST)

001: MSMEGVFLEK PKSNTTTTLP DLSLNISLPD THHHLHHNEL SRRSSQTDNN RSSNFELSLS HHNNPSSNPS TRILHCPDPR NLNLSHHQHY NNPILNGRSL
101: HQRVDESDIN NIHRPIRGIP VYHNRSFPFH QQTSHSSSLG GGDLDQSSIL NSSSSYNNAY RSLQSSPRLK GVPVHHHNHY GVVGSSDSSS PHHHHHGMIR
201: SRLLPKMPTK RSMRAPRMRW TSSLHARFVH AVELLGGHER ATPKSVLELM DVKDLTLAHV KSHLQMYRTV KTTNKPAASS DGSGEEEMGI NGNEAHHQSS
301: TNQRAKSDDS SHQEIDFPST QARWGNSSRE TWRSSNNCSS DIDTMVRTSS TPMISHHQRS ILLNQEQRSN DQVKRCGDLS CNNPSLEFTL GRPDWHNT

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.