CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	CDX73744	AT3G51180.1	21798944
AT1G07310.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06250	Canola	cytosol	84.94	81.74
CDY10267	Canola	cytosol	63.25	66.04
CDY06697	Canola	cytosol	62.05	64.58
AT1G07310.1	Thale cress	cytosol	67.17	63.35
KRH31112	Soybean	cytosol	28.92	40.17
GSMUA_Achr10P...	Banana	cytosol	37.95	38.18
VIT_06s0004g06150.t01	Wine grape	cytosol	36.14	38.1
KRG97773	Soybean	cytosol	33.43	37.12
PGSC0003DMT400015573	Potato	cytosol	34.04	34.98
Solyc09g082950.1.1	Tomato	cytosol	34.04	34.88
Zm00001d012336_P001	Maize	mitochondrion	34.04	34.56
Os01t0853800-01	Rice	plastid	33.43	33.95
TraesCS3B01G399500.1	Wheat	plastid	33.13	29.89
TraesCS3A01G367800.1	Wheat	plastid	32.83	29.7
HORVU3Hr1G085130.1	Barley	plastid	32.83	29.62
KXG33717	Sorghum	mitochondrion	34.04	29.27
TraesCS3D01G360800.1	Wheat	plastid	33.43	29.13
CDX87149	Canola	cytosol	18.37	28.5
CDY16874	Canola	cytosol	18.67	28.31

Protein Annotations

EnsemblPlants:CDY09924	EnsemblPlantsGene:GSBRNA2T00031691001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF53	PFAM:PF00168	PFscan:PS50004	ProteinID:CDY09924
ProteinID:CDY09924.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EF2ABF	UniProt:A0A078FA83
MapMan:35.2	:	:	:	:	:

Description

BnaC08g45270DBnaC08g45270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA83]

Coordinates

chrLK032000:+:104344..105384

Molecular Weight (calculated)

37247.5 Da

IEP (calculated)

8.935

GRAVY (calculated)

-0.760

Length

332 amino acids

Sequence
(BLAST)

001: MASSSSEPLE LIVTVVSAKH LKNVNWRNGD LKPYVVLYLD SDHRLSTRSD DSTKPVWNER ITLPLTRSVH ESVLNVEIFH SNSSDLGKAL VGSVRFPLVR
101: LIDSEGAINS LELIRPSGRT QGKIRLKLEI KERLIQPQNY YSAPTGLRPI QPQNYYSAPE GNRYYSPPPA PITSPSPQRD YRDFSPYPYT DHYYSRFYYP
201: PPPPPPRSMY DRASNYSLPR VPSAPVDHNP LPPRFPNYPP PPPSAPPSAP VDAFPANEHK LEAPPVGSRF SSYGAPSGPS APVDYSPYDH RQLQKTVGGL
301: SLEEERAVAE RSESEFGARP SSSYGRDYRR EC

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.