Factsheet for PGSC0003DMT400015573

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT1G07310.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT1G07310.1	PGSC0003DMT400092162	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g082950.1.1	Tomato	cytosol	90.71	90.43
KRH31112	Soybean	cytosol	44.58	60.25
KRG97773	Soybean	cytosol	52.32	56.52
VIT_13s0019g03420.t01	Wine grape	cytosol	45.82	55.43
GSMUA_Achr10P...	Banana	cytosol	49.23	48.18
Os01t0853800-01	Rice	plastid	41.49	40.98
Zm00001d012336_P001	Maize	mitochondrion	40.87	40.37
CDY10267	Canola	cytosol	36.53	37.11
HORVU3Hr1G085130.1	Barley	plastid	41.18	36.14
CDY06697	Canola	cytosol	35.6	36.05
Bra015573.1-P	Field mustard	cytosol	35.6	36.05
TraesCS3B01G399500.1	Wheat	plastid	40.56	35.6
KXG33717	Sorghum	mitochondrion	42.41	35.49
TraesCS3A01G367800.1	Wheat	plastid	40.25	35.42
AT1G07310.1	Thale cress	cytosol	37.77	34.66
TraesCS3D01G360800.1	Wheat	plastid	40.56	34.38
CDY09924	Canola	cytosol	34.98	34.04
PGSC0003DMT400076930	Potato	cytosol	28.17	33.7
Bra031570.1-P	Field mustard	cytosol	34.06	31.88
CDY06250	Canola	cytosol	33.44	31.3
PGSC0003DMT400026228	Potato	cytosol	30.96	28.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400015573	EnsemblPlantsGene:PGSC0003DMG400006079	EntrezGene:107057838	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF19	PFAM:PF00168	PFscan:PS50004
PGSC:PGSC0003DMG400006079	RefSeq:XP_015158360.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002966922
UniProt:M1A679	MapMan:35.2	:	:	:	:

Description

UPA18 [Source:PGSC_GENE;Acc:PGSC0003DMG400006079]

Coordinates

chr9:+:54955574..54956857

Molecular Weight (calculated)

35857.0 Da

IEP (calculated)

9.262

GRAVY (calculated)

-0.766

Length

323 amino acids

Sequence
(BLAST)

001: MATGSSRPPQ KTYDLEITIV SAKHLKNVNW HHGDLKPYVI FWVDPDQRRA TQADDSGNTR PVWNERFVLH LPQSQSPPHD AVLTLEIFHS KPSETPKPLV
101: GTLRVPLKEL VNVDDYNKIR TFELRRPSGR PHGKIRLKLA IRELSPTLDY QIPPPSSYYY STAPPPPPPS YRTFPSSPYP SHPHPPPSHV VAPPPPASPS
201: PPPPPPQQHS FPYSGFSDPY STYFPGYYSQ PPPPPRPFVE RQSSYGSLGS RPSAPVDYYP PYDQKRSGKI GMGVGTGLAV GAVAGTLGGL TLGEGLKYEE
301: AKIAERVENN TSARDDYSNY SEY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.