Factsheet for VIT_13s0019g03420.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g06150.t01	Wine grape	cytosol	58.8	49.84
KRH31112	Soybean	cytosol	42.32	47.28
Solyc09g082950.1.1	Tomato	cytosol	55.81	45.99
PGSC0003DMT400015573	Potato	cytosol	55.43	45.82
KRG97773	Soybean	cytosol	51.31	45.82
GSMUA_Achr10P...	Banana	cytosol	49.44	40.0
Os01t0853800-01	Rice	plastid	42.7	34.86
Zm00001d012336_P001	Maize	mitochondrion	40.82	33.33
HORVU3Hr1G085130.1	Barley	plastid	41.95	30.43
TraesCS3B01G399500.1	Wheat	plastid	41.95	30.43
TraesCS3A01G367800.1	Wheat	plastid	41.57	30.25
TraesCS3D01G360800.1	Wheat	plastid	42.32	29.66
VIT_16s0050g00850.t01	Wine grape	cytosol	31.46	29.37
KXG33717	Sorghum	mitochondrion	41.2	28.5
VIT_16s0050g01300.t01	Wine grape	cytosol	28.46	28.36
VIT_16s0050g01310.t01	Wine grape	cytosol	28.46	28.36

Protein Annotations

EntrezGene:100266706	wikigene:100266706	Gene3D:2.60.40.150	MapMan:35.2	InterPro:C2_dom	InterPro:C2_domain_sf
ProteinID:CCB56235	ProteinID:CCB56235.1	UniProt:F6HNL6	EMBL:FN595998	InterPro:IPR000008	InterPro:IPR035892
EntrezGene:LOC100266706	wikigene:LOC100266706	PFAM:PF00168	PFscan:PS50004	PANTHER:PTHR32246	PANTHER:PTHR32246:SF19
SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI00015CA14C	ArrayExpress:VIT_13s0019g03420	EnsemblPlantsGene:VIT_13s0019g03420	EnsemblPlants:VIT_13s0019g03420.t01
unigene:Vvi.22904	RefSeq:XP_002279465	RefSeq:XP_002279465.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:4483177..4484173

Molecular Weight (calculated)

30140.4 Da

IEP (calculated)

8.823

GRAVY (calculated)

-0.743

Length

267 amino acids

Sequence
(BLAST)

001: MASSRPLDID LTVVSAKHLQ NVNWKHGELK PYAIFWVDPD RRLATKPDES GSTCPVWNER FTVSVNLPLH DSVLTLEVFH SKPSETPKPL VGSLQVPLKD
101: LVDSDDSNRI KTFQLRRPSG RPQGKIRVKL AIRERPSPPA PDYYLTPPVS FYYSSAPPPP APNPVGYSHL SHTIPLPPPV PQSPSPHPYG TFCNPYPGYY
201: GYYSRAPPPP RPFFDWSANY GGPSAPVDHS PYDQKQMGVK YEEAKIKDRA ESELGARDYY KDHRFDY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.