Factsheet for TraesCS3B01G399500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT1G07310.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT1G07310.1	TraesCS2D01G492400.1	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G085130.1	Barley	plastid	97.28	97.28
TraesCS3A01G367800.1	Wheat	plastid	96.2	96.46
TraesCS3D01G360800.1	Wheat	plastid	98.1	94.75
Zm00001d012336_P001	Maize	mitochondrion	66.58	74.92
Os01t0853800-01	Rice	plastid	64.13	72.17
KXG33717	Sorghum	mitochondrion	66.58	63.47
GSMUA_Achr10P...	Banana	cytosol	43.48	48.48
KRH31112	Soybean	cytosol	30.98	47.7
VIT_06s0004g06150.t01	Wine grape	cytosol	38.59	45.08
KRG97773	Soybean	cytosol	35.33	43.48
VIT_13s0019g03420.t01	Wine grape	cytosol	30.43	41.95
Solyc09g082950.1.1	Tomato	cytosol	36.14	41.05
PGSC0003DMT400015573	Potato	cytosol	35.6	40.56
TraesCS7B01G436800.1	Wheat	cytosol	28.26	35.62
CDY10267	Canola	cytosol	30.16	34.91
CDY06697	Canola	cytosol	30.16	34.8
TraesCS6B01G143000.1	Wheat	cytosol	27.45	34.24
Bra015573.1-P	Field mustard	cytosol	29.35	33.86
AT1G07310.1	Thale cress	cytosol	32.07	33.52
CDY09924	Canola	cytosol	29.89	33.13
TraesCS7B01G436400.1	Wheat	cytosol	28.26	32.2
Bra031570.1-P	Field mustard	cytosol	28.8	30.72
TraesCS4B01G001000.1	Wheat	cytosol	28.53	30.26
CDY06250	Canola	cytosol	28.26	30.14

Protein Annotations

EnsemblPlants:TraesCS3B01G399500.1	EnsemblPlantsGene:TraesCS3B01G399500	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF19	PFAM:PF00168	SEG:seg	SMART:SM00239
SUPFAM:SSF49562	TIGR:cd04051	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3B:+:630591591..630592733

Molecular Weight (calculated)

40097.9 Da

IEP (calculated)

9.255

GRAVY (calculated)

-0.926

Length

368 amino acids

Sequence
(BLAST)

001: MASPSPSPSP LHPHQLQQHP LPPHQHPHPQ YQAPPPSMPP PPGAPPKAMD LEVTVVSGKH LKNVNWRRGD LRAYAVAYLD PSRRTATRPD DAGGCKPAWN
101: ERITLQLPPH LSPHDPSLLL SLDVFHSKPS DSPKPLVGSA RSPLRDLLFP AGPNPSSDSP TSPIITLPLL RPSGRPQGKL RIRVALRERS PPPPEPQYPP
201: PSSSPYYFPA PPPPTYSAPP QYGSDQYYRP SGYYSAPPAP PPSQYEYTTG PSAPVEYGRQ YEQRGRTEGV TGQYDPRRTE GVTGQYEPKG RTEGVTGQYE
301: QRGRTEGGTP SERYGLGTGL AVGAVAGGVG ALAIDEGVKY KEEKAAERVG EKVTPAARDD YSEYRREY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.