Factsheet for TraesCS6B01G143000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G104000.1	Wheat	cytosol	86.1	87.89
HORVU6Hr1G020750.2	Barley	cytosol	81.36	85.71
HORVU6Hr1G020740.1	Barley	cytosol	36.61	77.7
TraesCS6A01G115400.1	Wheat	cytosol	76.27	75.0
Os08t0562600-03	Rice	plastid	64.75	65.64
Os09t0571200-01	Rice	cytosol	64.07	65.17
Zm00001d031892_P001	Maize	cytosol	58.98	61.7
GSMUA_Achr10P...	Banana	cytosol	44.75	60.55
TraesCS7B01G436800.1	Wheat	cytosol	58.98	59.59
EES15243	Sorghum	cytosol, peroxisome, plastid	55.93	56.9
CDX87149	Canola	cytosol	40.34	55.61
TraesCS7B01G436400.1	Wheat	cytosol	60.34	55.11
TraesCS4B01G001000.1	Wheat	cytosol	64.07	54.47
CDY16874	Canola	cytosol	39.66	53.42
Solyc06g036110.1.1	Tomato	cytosol, extracellular	44.41	52.82
PGSC0003DMT400076930	Potato	cytosol	47.46	51.85
KRH38406	Soybean	nucleus	49.15	51.6
KRH08884	Soybean	cytosol	44.75	51.56
VIT_16s0050g01310.t01	Wine grape	cytosol	46.78	51.49
VIT_16s0050g01300.t01	Wine grape	cytosol	45.08	49.63
VIT_16s0050g00850.t01	Wine grape	cytosol	46.1	47.55
GSMUA_Achr11P...	Banana	cytosol	10.85	47.06
Bra026474.1-P	Field mustard	cytosol	40.68	46.33
AT5G23950.2	Thale cress	cytosol	35.25	44.26
Solyc03g025340.1.1	Tomato	cytosol	50.85	42.98
PGSC0003DMT400026228	Potato	cytosol	49.83	41.88
KRH08885	Soybean	cytosol	33.56	41.42
TraesCS3B01G399500.1	Wheat	plastid	34.24	27.45

Protein Annotations

EnsemblPlants:TraesCS6B01G143000.1	EnsemblPlantsGene:TraesCS6B01G143000	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	PFAM:PF00168	SEG:seg	SMART:SM00239
SUPFAM:SSF49562	TIGR:cd04051	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6B:+:142612422..142613492

Molecular Weight (calculated)

30703.4 Da

IEP (calculated)

4.488

GRAVY (calculated)

-0.544

Length

295 amino acids

Sequence
(BLAST)

001: MGSRYEVEVT VGSARDLKNV NWRNGDLQPY AVLWVDDGPK CSSRVDLDNG ESPEWDEKLT VPLPPSTTRL EDAVLHIDVV HANAAEGTKP LVGSARLPLR
101: DVLDDAGLGG RASRSLRLKR PSGRPQGRVD VRVAVRETAR YYDPAYPPPY GQSQSQSRDP YAAPAPYGSG GYGYGQQQQP YAAPPSGYPA AYGAAVPPQS
201: AGYPAAYGGA QPAYGAAAPA PAYGSGGYGS GSMNDPAKKK GMGMGAGLAV GAAAGVLGGL ALAEGASYLE DKFEDDVAEK VEDDLAGGGY DDDDY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.