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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
plastid: 21433289
nucleus: 24133045
plasma membrane: 27800704
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G020740.1 Barley cytosol 32.99 69.06
HORVU6Hr1G020750.2 Barley cytosol 65.64 68.21
Os09t0571200-01 Rice cytosol 67.35 67.59
TraesCS6B01G143000.1 Wheat cytosol 65.64 64.75
Zm00001d031892_P001 Maize cytosol 62.54 64.54
TraesCS6D01G104000.1 Wheat cytosol 63.57 64.01
TraesCS6A01G115400.1 Wheat cytosol 65.98 64.0
GSMUA_Achr10P... Banana cytosol 46.05 61.47
EES15243 Sorghum cytosol, peroxisome, plastid 58.76 58.97
CDX87149 Canola cytosol 40.21 54.67
GSMUA_Achr11P... Banana cytosol 12.37 52.94
Solyc06g036110.1.1 Tomato cytosol, extracellular 45.02 52.82
CDY16874 Canola cytosol 39.52 52.51
VIT_16s0050g01310.t01 Wine grape cytosol 47.77 51.87
PGSC0003DMT400076930 Potato cytosol 47.42 51.11
KRH38406 Soybean nucleus 48.8 50.53
VIT_16s0050g01300.t01 Wine grape cytosol 46.05 50.0
Bra026474.1-P Field mustard cytosol 43.99 49.42
KRH08884 Soybean cytosol 42.27 48.05
VIT_16s0050g00850.t01 Wine grape cytosol 45.02 45.8
AT5G23950.2 Thale cress cytosol 35.4 43.83
Solyc03g025340.1.1 Tomato cytosol 49.14 40.97
PGSC0003DMT400026228 Potato cytosol 48.8 40.46
KRH08885 Soybean cytosol 31.62 38.49
Os01t0853800-01 Rice plastid 38.14 33.95
Protein Annotations
Gene3D:2.60.40.150MapMan:35.2EntrezGene:4346336EMBL:AK061296EMBL:AK099905ProteinID:BAD09616.1
ProteinID:BAF24435.1ProteinID:BAT06719.1InterPro:C2_domInterPro:C2_domain_sfProteinID:EAZ43672.1GO:GO:0005575
GO:GO:0016020GO:GO:0016021InterPro:IPR000008InterPro:IPR035892EnsemblPlantsGene:Os08g0562600EnsemblPlants:Os08t0562600-03
PFAM:PF00168PFscan:PS50004PANTHER:PTHR32246PANTHER:PTHR32246:SF52UniProt:Q6ZBX9SMART:SM00239
SUPFAM:SSF49562TMHMM:TMhelixUniParc:UPI000023AEA6RefSeq:XP_015649852.1SEG:seg:
Description
C2 calcium-dependent membrane targeting domain containing protein. (Os08t0562600-03)
Coordinates
chr8:-:28170523..28172296
Molecular Weight (calculated)
30346.2 Da
IEP (calculated)
4.556
GRAVY (calculated)
-0.480
Length
291 amino acids
Sequence
(BLAST)
001: MGSRYEVEVT VSSARDLKNV NWRNGDLKPY AVLWVDDGAK CSTRVDLDNA DNPNWDDKLT LPLPPSSRLD DALLYLDVVH ANAAEGVKPL VGSARLPLRD
101: VLDDAGVGAR VSRSLRLKRP SGRPQGRLDL RLAVRESARY YDPSPYPAPY GQPAGTRDPY GAPPPAYSSG SGGQYPYGGG YGSGGYAAPP AGYPSAYGAP
201: PQPAYGGAPP VAAYGAAGGA PVVVEETKKK SKMGMGTGLA VGAAAGVLGG LALAGGASYL EDKFEEGVAE KVEDDLDRDD DYAAGGYDDD Y
Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)
001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE
Arabidopsis Description
Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.