Factsheet for VIT_16s0050g01310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g01300.t01	Wine grape	cytosol	96.27	96.27
VIT_16s0050g00850.t01	Wine grape	cytosol	72.39	67.83
Solyc06g036110.1.1	Tomato	cytosol, extracellular	53.36	57.66
PGSC0003DMT400076930	Potato	cytosol	56.72	56.3
CDX87149	Canola	cytosol	44.03	55.14
CDY16874	Canola	cytosol	44.03	53.88
Bra026474.1-P	Field mustard	cytosol	49.63	51.35
KRH08884	Soybean	cytosol	48.88	51.17
GSMUA_Achr10P...	Banana	cytosol	41.42	50.92
HORVU6Hr1G020750.2	Barley	cytosol	52.61	50.36
GSMUA_Achr11P...	Banana	cytosol	12.69	50.0
KRH38406	Soybean	nucleus	50.75	48.4
HORVU6Hr1G020740.1	Barley	cytosol	25.0	48.2
Os08t0562600-03	Rice	plastid	51.87	47.77
TraesCS6D01G104000.1	Wheat	cytosol	50.75	47.06
TraesCS6B01G143000.1	Wheat	cytosol	51.49	46.78
AT5G23950.2	Thale cress	cytosol	40.67	46.38
Os09t0571200-01	Rice	cytosol	50.0	46.21
Zm00001d031892_P001	Maize	cytosol	47.39	45.04
TraesCS6A01G115400.1	Wheat	cytosol	48.88	43.67
TraesCS7B01G436800.1	Wheat	cytosol	46.64	42.81
PGSC0003DMT400026228	Potato	cytosol	55.22	42.17
Solyc03g025340.1.1	Tomato	cytosol	54.85	42.12
EES15243	Sorghum	cytosol, peroxisome, plastid	44.78	41.38
TraesCS4D01G001900.1	Wheat	cytosol	49.63	41.05
TraesCS7A01G520000.1	Wheat	cytosol	47.39	40.58
TraesCS7B01G436400.1	Wheat	cytosol	48.51	40.25
HORVU4Hr1G000850.1	Barley	cytosol	48.13	39.57
Zm00001d019750_P001	Maize	cytosol	47.76	39.51
TraesCS7D01G509700.1	Wheat	cytosol	47.76	39.14
TraesCS4A01G312300.1	Wheat	cytosol	47.39	38.6
Zm00001d005315_P001	Maize	cytosol, extracellular	47.39	38.37
TraesCS4B01G001000.1	Wheat	cytosol	49.63	38.33
EER98534	Sorghum	cytosol	47.39	38.25
KRH08885	Soybean	cytosol	31.34	35.15
VIT_06s0004g06150.t01	Wine grape	cytosol	36.19	30.79
VIT_13s0019g03420.t01	Wine grape	cytosol	28.36	28.46

Protein Annotations

EntrezGene:100852496	wikigene:100852496	Gene3D:2.60.40.150	MapMan:35.2	UniProt:A5C7K3	EMBL:AM485141
InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAN62171	ProteinID:CAN62171.1	ProteinID:CCB47826	ProteinID:CCB47826.1
EMBL:FN595243	InterPro:IPR000008	InterPro:IPR035892	EntrezGene:LOC100852496	wikigene:LOC100852496	PFAM:PF00168
PFscan:PS50004	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0001522B74
ArrayExpress:VIT_16s0050g01310	EnsemblPlantsGene:VIT_16s0050g01310	EnsemblPlants:VIT_16s0050g01310.t01	unigene:Vvi.5181	RefSeq:XP_003634095	RefSeq:XP_003634095.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:-:18178042..18179133

Molecular Weight (calculated)

29094.8 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.535

Length

268 amino acids

Sequence
(BLAST)

001: MAPRFELKLK ISSAKDLKNV NWRHGSLKPY AVVWVEPNAK CSTKVDHDGD TFPSWNETLH IPVPSSIDDS ALYLDIVHVK SDDEDDTKPM VGSARLFLRD
101: VVDDVGFGVE AFRTLELRRP SGRPQGKVDV EVSVRDLRYR APEPYYTAPY GVPPPPGTRG AGYADPPAYG APPPDPYYSN AAPYSHSPYG QPAYGYQEPT
201: YGYGQGTYGQ TVVVEEKKKK SGMGMGTGLA VGAVAGVLGG LAIAEGVDAL EDNIAEDVAE RIEDEEDD

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.