Factsheet for PGSC0003DMT400026228

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g025340.1.1	Tomato	cytosol	90.88	91.4
PGSC0003DMT400076930	Potato	cytosol	45.58	59.26
CDY16874	Canola	cytosol	36.47	58.45
CDX87149	Canola	cytosol	35.61	58.41
HORVU6Hr1G020740.1	Barley	cytosol	21.94	55.4
VIT_16s0050g01310.t01	Wine grape	cytosol	42.17	55.22
Bra026474.1-P	Field mustard	cytosol	40.17	54.44
VIT_16s0050g01300.t01	Wine grape	cytosol	41.03	53.73
KRH38406	Soybean	nucleus	41.03	51.25
GSMUA_Achr10P...	Banana	cytosol	31.62	50.92
HORVU6Hr1G020750.2	Barley	cytosol	40.46	50.71
VIT_16s0050g00850.t01	Wine grape	cytosol	41.31	50.7
TraesCS6D01G104000.1	Wheat	cytosol	41.6	50.52
TraesCS6B01G143000.1	Wheat	cytosol	41.88	49.83
Os08t0562600-03	Rice	plastid	40.46	48.8
GSMUA_Achr11P...	Banana	cytosol	9.4	48.53
TraesCS6A01G115400.1	Wheat	cytosol	41.31	48.33
KRH08884	Soybean	cytosol	34.19	46.88
Zm00001d031892_P001	Maize	cytosol	37.32	46.45
Os09t0571200-01	Rice	cytosol	37.89	45.86
AT5G23950.2	Thale cress	cytosol	30.2	45.11
TraesCS4D01G001900.1	Wheat	cytosol	40.74	44.14
EES15243	Sorghum	cytosol, peroxisome, plastid	36.18	43.79
TraesCS4A01G312300.1	Wheat	cytosol	40.46	43.16
TraesCS7B01G436800.1	Wheat	cytosol	35.04	42.12
TraesCS4B01G001000.1	Wheat	cytosol	41.03	41.5
Zm00001d005315_P001	Maize	cytosol, extracellular	39.03	41.39
Zm00001d019750_P001	Maize	cytosol	37.89	41.05
KRH08885	Soybean	cytosol	27.92	41.0
TraesCS7A01G520000.1	Wheat	cytosol	36.47	40.89
TraesCS7D01G509700.1	Wheat	cytosol	37.89	40.67
HORVU4Hr1G000850.1	Barley	cytosol	37.61	40.49
TraesCS7B01G436400.1	Wheat	cytosol	36.75	39.94
EER98534	Sorghum	cytosol	35.9	37.95
PGSC0003DMT400015573	Potato	cytosol	28.49	30.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400026228	EnsemblPlantsGene:PGSC0003DMG400010115	EntrezGene:102581444	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF17	PFAM:PF00168	PFscan:PS50004
PGSC:PGSC0003DMG400010115	RefSeq:XP_006353888.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000294EAD4
UniProt:M1AMV5	MapMan:35.2	:	:	:	:

Description

C2 domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010115]

Coordinates

chr3:+:43572897..43574394

Molecular Weight (calculated)

36530.3 Da

IEP (calculated)

4.817

GRAVY (calculated)

-0.649

Length

351 amino acids

Sequence
(BLAST)

001: MGSQFEVEVK ISSAKDLKNV NWRYGRLKPY AVVWVDPKGK CSTKVDDNGD TSPSWNEKLV IPLYAPIEES TLYIDVVHAN ATEGTKPLIG SAKLPLREVV
101: DSVGIGNLTE RSLDLKRPSG RPHGKVKIEV TVRDPRYRAP DPYYAPPYGV PPPAGSRDYP APPQPYGGSY GAPGAAPSPY GAPAPAPSPY GAPAPYAAPP
201: AGYPYNAAPA PGPAPGYGGA PALAPGYGQQ PGYGAPPAPY GQQGSYGQQP GYPQQGGYGS QGSYGQQGSY GAQPQGSYGS EKAGYGYEEK KKSKFGGMGL
301: GAGLAMGAVA GALGGLAISE GIDHIEDNIA EKAAEKVEDD LDDGDYDNDD Y

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.