Factsheet for TraesCS4B01G001000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G001900.1	Wheat	cytosol	88.18	94.44
TraesCS4A01G312300.1	Wheat	cytosol	83.57	88.15
HORVU4Hr1G000850.1	Barley	cytosol	80.4	85.58
TraesCS7B01G436800.1	Wheat	cytosol	61.96	73.63
TraesCS7B01G436400.1	Wheat	cytosol	66.28	71.21
Zm00001d019750_P001	Maize	cytosol	62.54	66.98
EER98534	Sorghum	cytosol	61.38	64.16
TraesCS6B01G143000.1	Wheat	cytosol	54.47	64.07
Zm00001d005315_P001	Maize	cytosol, extracellular	59.65	62.54
GSMUA_Achr10P...	Banana	cytosol	36.31	57.8
CDX87149	Canola	cytosol	33.14	53.74
GSMUA_Achr11P...	Banana	cytosol	10.09	51.47
CDY16874	Canola	cytosol	31.99	50.68
VIT_16s0050g01310.t01	Wine grape	cytosol	38.33	49.63
Solyc06g036110.1.1	Tomato	cytosol, extracellular	34.87	48.79
VIT_16s0050g01300.t01	Wine grape	cytosol	37.46	48.51
KRH08884	Soybean	cytosol	35.73	48.44
KRH38406	Soybean	nucleus	39.19	48.4
PGSC0003DMT400076930	Potato	cytosol	37.18	47.78
Bra026474.1-P	Field mustard	cytosol	35.45	47.49
AT5G23950.2	Thale cress	cytosol	31.41	46.38
VIT_16s0050g00850.t01	Wine grape	cytosol	36.6	44.41
Solyc03g025340.1.1	Tomato	cytosol	42.94	42.69
PGSC0003DMT400026228	Potato	cytosol	41.5	41.03
KRH08885	Soybean	cytosol	27.67	40.17
TraesCS3B01G399500.1	Wheat	plastid	30.26	28.53

Protein Annotations

EnsemblPlants:TraesCS4B01G001000.1	EnsemblPlantsGene:TraesCS4B01G001000	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	TIGR:cd04051	TMHMM:TMhelix	MapMan:35.2	:

Description

No Description!

Coordinates

chr4B:-:639894..640937

Molecular Weight (calculated)

34636.0 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.365

Length

347 amino acids

Sequence
(BLAST)

001: MGSRYEVEIT VGSARDLKNV NWRNGDLKPY AVLWIDAGAR CSTRVDLDNG DNPAWDEKVL VPLPPASRLE DAVLYIDVVH ANAAEGVKPL VGSARLPLRD
101: VVDDAGVGGK ASRNLRLKRP SGRPQGKLDV RVAVKEPARY YDSNVPGGYP APAGYGSSRD AYGGGYGAGA GAYGAAAGAG GYGAYAAAAP PSGYPGYGST
201: APPPQAAAPY GSAPPPYGAA PPAQGAGAYG SSVQPAYGAA PPTQGAGAYG SSASAYGAAQ PGQAAGYGGT TGVGLDQSGG KTKKKGMGMA GGLAVGAAAG
301: VLGGLALAGG ASYVEHKIED HVTERVEEDM YRGGGGGYDD YGGDDDY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.