Factsheet for Zm00001d005315_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019750_P001	Maize	cytosol	69.49	70.99
TraesCS7B01G436800.1	Wheat	cytosol	57.4	65.07
HORVU4Hr1G000850.1	Barley	cytosol	62.24	63.19
Zm00001d031892_P001	Maize	cytosol	53.17	62.41
TraesCS7A01G520000.1	Wheat	cytosol	58.91	62.3
TraesCS4D01G001900.1	Wheat	cytosol	60.73	62.04
TraesCS7B01G436400.1	Wheat	cytosol	59.21	60.68
TraesCS4B01G001000.1	Wheat	cytosol	62.54	59.65
TraesCS4A01G312300.1	Wheat	cytosol	58.01	58.36
GSMUA_Achr10P...	Banana	cytosol	38.07	57.8
TraesCS7D01G509700.1	Wheat	cytosol	57.1	57.8
CDX87149	Canola	cytosol	35.05	54.21
CDY16874	Canola	cytosol	34.44	52.05
GSMUA_Achr11P...	Banana	cytosol	10.57	51.47
Solyc06g036110.1.1	Tomato	cytosol, extracellular	38.07	50.81
KRH38406	Soybean	nucleus	42.6	50.18
PGSC0003DMT400076930	Potato	cytosol	40.18	49.26
KRH08884	Soybean	cytosol	37.16	48.05
VIT_16s0050g01310.t01	Wine grape	cytosol	38.37	47.39
Bra026474.1-P	Field mustard	cytosol	36.86	47.1
AT5G23950.2	Thale cress	cytosol	32.63	45.96
VIT_16s0050g01300.t01	Wine grape	cytosol	36.86	45.52
VIT_16s0050g00850.t01	Wine grape	cytosol	38.07	44.06
Solyc03g025340.1.1	Tomato	cytosol	42.6	40.4
KRH08885	Soybean	cytosol	28.4	39.33
PGSC0003DMT400026228	Potato	cytosol	41.39	39.03
Zm00001d012336_P001	Maize	mitochondrion	33.84	34.25

Protein Annotations

EntrezGene:100274244	Gene3D:2.60.40.150	MapMan:35.2	UniProt:B4F9K2	EMBL:BT033790	EMBL:BT042596
EMBL:BT087466	InterPro:C2_dom	InterPro:C2_domain_sf	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000008	InterPro:IPR035892	ProteinID:ONM20827.1	PFAM:PF00168	PFscan:PS50004	PANTHER:PTHR32246
PANTHER:PTHR32246:SF52	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI00017B6191	EnsemblPlantsGene:Zm00001d005315
EnsemblPlants:Zm00001d005315_P001	EnsemblPlants:Zm00001d005315_T001	SEG:seg	:	:	:

Description

Calcium-dependent lipid-binding (CaLB domain) family protein

Coordinates

chr2:+:169380169..169381164

Molecular Weight (calculated)

33576.6 Da

IEP (calculated)

4.798

GRAVY (calculated)

-0.469

Length

331 amino acids

Sequence
(BLAST)

001: MGSRYEVEVT VGSARDLKNV NWRNGDLKPY AVVWIDSGSK CSTRVDLDNG ESPAWDEKLL VPLPPTSRLD DAVLYVDVVH ANAAQGVKPL VGSARLPLRD
101: VLDDAGVGGK ASRSLRLKRP SGRPHGRLDV RVAVKEPSRY YDPNPYPAPA AYANTGGGTR DPYGSSAAAA GGYYGSGGGY GSGGGAYGGG AYGAAQPYTA
201: APPAGYPSTY GAAPPPQPAA AYGAPPAAAY GAPPVAATAA YGTGAVASDG KKKNKMGMGT GLAVGAAAGV LGGLALAGGA SYLEDKFEER VSERVEDNLE
301: REESYGGGGG GYGGGYDDYG GNDDYGGDDD Y

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.