CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08884	Soybean	cytosol	64.77	71.09
CDX87149	Canola	cytosol	47.33	62.15
CDY16874	Canola	cytosol	46.26	59.36
KRH08885	Soybean	cytosol	49.11	57.74
Bra026474.1-P	Field mustard	cytosol	51.25	55.6
Solyc06g036110.1.1	Tomato	cytosol, extracellular	48.04	54.44
GSMUA_Achr10P...	Banana	cytosol	41.99	54.13
HORVU6Hr1G020740.1	Barley	cytosol	26.33	53.24
GSMUA_Achr11P...	Banana	cytosol	12.46	51.47
PGSC0003DMT400076930	Potato	cytosol	49.11	51.11
VIT_16s0050g01310.t01	Wine grape	cytosol	48.4	50.75
TraesCS6D01G104000.1	Wheat	cytosol	51.96	50.52
HORVU6Hr1G020750.2	Barley	cytosol	49.82	50.0
AT5G23950.2	Thale cress	cytosol	41.64	49.79
TraesCS6B01G143000.1	Wheat	cytosol	51.6	49.15
VIT_16s0050g00850.t01	Wine grape	cytosol	49.82	48.95
Zm00001d031892_P001	Maize	cytosol	49.11	48.94
VIT_16s0050g01300.t01	Wine grape	cytosol	46.62	48.88
Os08t0562600-03	Rice	plastid	50.53	48.8
Os09t0571200-01	Rice	cytosol	49.11	47.59
TraesCS6A01G115400.1	Wheat	cytosol	49.82	46.67
TraesCS7B01G436800.1	Wheat	cytosol	45.91	44.18
EES15243	Sorghum	cytosol, peroxisome, plastid	45.55	44.14
TraesCS4D01G001900.1	Wheat	cytosol	49.47	42.9
Zm00001d005315_P001	Maize	cytosol, extracellular	50.18	42.6
TraesCS7A01G520000.1	Wheat	cytosol	47.33	42.49
EER98534	Sorghum	cytosol	50.18	42.47
Zm00001d019750_P001	Maize	cytosol	48.04	41.67
TraesCS7D01G509700.1	Wheat	cytosol	48.04	41.28
PGSC0003DMT400026228	Potato	cytosol	51.25	41.03
HORVU4Hr1G000850.1	Barley	cytosol	46.98	40.49
TraesCS4A01G312300.1	Wheat	cytosol	46.98	40.12
Solyc03g025340.1.1	Tomato	cytosol	49.47	39.83
TraesCS4B01G001000.1	Wheat	cytosol	48.4	39.19
TraesCS7B01G436400.1	Wheat	cytosol	44.84	39.01
KRH31112	Soybean	cytosol	26.33	30.96
KRG97773	Soybean	cytosol	31.67	29.77

Protein Annotations

EMBL:ACUP02005810	EnsemblPlants:KRH38406	EnsemblPlantsGene:GLYMA_09G134500	EntrezGene:100817630	Gene3D:2.60.40.150	InterPro:C2_dom
InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	PFAM:PF00168
ProteinID:KRH38406	ProteinID:KRH38406.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix
UniParc:UPI00023385FC	UniProt:I1L340	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:33456132..33457621

Molecular Weight (calculated)

30302.1 Da

IEP (calculated)

4.634

GRAVY (calculated)

-0.661

Length

281 amino acids

Sequence
(BLAST)

001: MGSRYEVELK LSSARALKNV NWRHGPNRPY VVVWVDPSNK LSTRVDESGD TDANWDQTLT IPLPPKPLED QTLYIDVVHA GSEEDTKPLI GSARLKLVDI
101: LDDVGIGERV SRTLSLKRPS GRPHGKVEVS VTIREPSYRA QGGYNAPPYG VRDYSPAPQG YGGYPPYGAP PQQAYYSAPP SGYPYNAPPQ PYNAPPQSGY
201: GYNALPQTAS YGQGSGYGYA PQEEKKKSKF GGMGTGLAVG AVAGALGGIA LVEGAEYVED KIEDDVAERV EDDLGYDGDD F

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.