Factsheet for AT5G23950.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87149	Canola	cytosol	65.11	71.5
CDY16874	Canola	cytosol	64.26	68.95
Bra026474.1-P	Field mustard	cytosol	64.68	58.69
HORVU6Hr1G020740.1	Barley	cytosol	28.51	48.2
GSMUA_Achr11P...	Banana	cytosol	13.19	45.59
Solyc06g036110.1.1	Tomato	cytosol, extracellular	48.09	45.56
KRH08884	Soybean	cytosol	47.66	43.75
KRH38406	Soybean	nucleus	49.79	41.64
PGSC0003DMT400076930	Potato	cytosol	47.66	41.48
GSMUA_Achr10P...	Banana	cytosol	38.3	41.28
VIT_16s0050g01310.t01	Wine grape	cytosol	46.38	40.67
VIT_16s0050g01300.t01	Wine grape	cytosol	45.53	39.93
KRH08885	Soybean	cytosol	40.43	39.75
HORVU6Hr1G020750.2	Barley	cytosol	45.53	38.21
VIT_16s0050g00850.t01	Wine grape	cytosol	45.11	37.06
Zm00001d031892_P001	Maize	cytosol	44.26	36.88
TraesCS6D01G104000.1	Wheat	cytosol	45.11	36.68
Os09t0571200-01	Rice	cytosol	44.68	36.21
EES15243	Sorghum	cytosol, peroxisome, plastid	44.68	36.21
Os08t0562600-03	Rice	plastid	43.83	35.4
TraesCS6A01G115400.1	Wheat	cytosol	45.11	35.33
TraesCS6B01G143000.1	Wheat	cytosol	44.26	35.25
TraesCS7B01G436800.1	Wheat	cytosol	43.4	34.93
TraesCS4D01G001900.1	Wheat	cytosol	47.23	34.26
HORVU4Hr1G000850.1	Barley	cytosol	47.23	34.05
TraesCS7A01G520000.1	Wheat	cytosol	45.11	33.87
Zm00001d019750_P001	Maize	cytosol	46.38	33.64
EER98534	Sorghum	cytosol	46.38	32.83
Zm00001d005315_P001	Maize	cytosol, extracellular	45.96	32.63
TraesCS4A01G312300.1	Wheat	cytosol	44.68	31.91
TraesCS7B01G436400.1	Wheat	cytosol	43.83	31.89
TraesCS7D01G509700.1	Wheat	cytosol	44.26	31.8
TraesCS4B01G001000.1	Wheat	cytosol	46.38	31.41
PGSC0003DMT400026228	Potato	cytosol	45.11	30.2
Solyc03g025340.1.1	Tomato	cytosol	44.26	29.8
AT1G07310.1	Thale cress	cytosol	25.11	16.76

Protein Annotations

Gene3D:2.60.40.150	MapMan:35.2	EntrezGene:832460	ProteinID:AED93237.1	ProteinID:ANM68220.1	ArrayExpress:AT5G23950
EnsemblPlantsGene:AT5G23950	RefSeq:AT5G23950	TAIR:AT5G23950	RefSeq:AT5G23950-TAIR-G	EnsemblPlants:AT5G23950.2	ProteinID:BAB10068.1
EMBL:BT020351	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	RefSeq:NP_001329993.1
RefSeq:NP_197783.2	PFAM:PF00168	PANTHER:PTHR32246	PANTHER:PTHR32246:SF17	UniProt:Q9FF85	SMART:SM00239
SUPFAM:SSF49562	UniParc:UPI00000A231C	SEG:seg	:	:	:

Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]

Coordinates

chr5:+:8082650..8083772

Molecular Weight (calculated)

25290.0 Da

IEP (calculated)

4.020

GRAVY (calculated)

-0.532

Length

235 amino acids

Sequence
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.