Factsheet for TraesCS4D01G001900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G001000.1	Wheat	cytosol	94.44	88.18
HORVU4Hr1G000850.1	Barley	cytosol	85.8	85.28
TraesCS4A01G312300.1	Wheat	cytosol	83.33	82.07
TraesCS7D01G509700.1	Wheat	cytosol	75.31	74.62
Zm00001d019750_P001	Maize	cytosol	65.74	65.74
TraesCS6D01G104000.1	Wheat	cytosol	56.79	63.67
EER98534	Sorghum	cytosol	64.81	63.25
Zm00001d005315_P001	Maize	cytosol, extracellular	62.04	60.73
GSMUA_Achr10P...	Banana	cytosol	38.89	57.8
CDX87149	Canola	cytosol	36.73	55.61
CDY16874	Canola	cytosol	35.8	52.97
GSMUA_Achr11P...	Banana	cytosol	10.49	50.0
Solyc06g036110.1.1	Tomato	cytosol, extracellular	38.27	50.0
VIT_16s0050g01310.t01	Wine grape	cytosol	41.05	49.63
KRH38406	Soybean	nucleus	42.9	49.47
KRH08884	Soybean	cytosol	38.89	49.22
Bra026474.1-P	Field mustard	cytosol	38.89	48.65
VIT_16s0050g01300.t01	Wine grape	cytosol	40.12	48.51
PGSC0003DMT400076930	Potato	cytosol	39.81	47.78
AT5G23950.2	Thale cress	cytosol	34.26	47.23
VIT_16s0050g00850.t01	Wine grape	cytosol	38.58	43.71
Solyc03g025340.1.1	Tomato	cytosol	45.68	42.41
KRH08885	Soybean	cytosol	30.56	41.42
PGSC0003DMT400026228	Potato	cytosol	44.14	40.74
TraesCS3D01G360800.1	Wheat	plastid	31.79	27.03

Protein Annotations

EnsemblPlants:TraesCS4D01G001900.1	EnsemblPlantsGene:TraesCS4D01G001900	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	PFAM:PF00168	PFscan:PS50004	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	TIGR:cd04051	TMHMM:TMhelix	MapMan:35.2	:

Description

No Description!

Coordinates

chr4D:+:1239483..1240526

Molecular Weight (calculated)

32566.8 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.375

Length

324 amino acids

Sequence
(BLAST)

001: MGSRYEVEVT VGSARDLKNV NWRNGGLKPY AVLWIDAGAR CSTRVDLDNG DNPSWDEKVV VPLPPASRLE DAVLYIDVVH ANAAEGVKPL VGSARLPLRD
101: VVDDAGVGGK VSRNLRLKRP SGRPQGKLDV RVAVKEPARY YDSNVPGGYP APAGYGSSRD AYGGGYGAGA GAYGAAAGAG GYGAYAAAAP PSGYPGYGST
201: APPPQAAAAP YGAAPPPYGA APPTQGAGGY GSSVQPAYGA APPTQGAGGY GSSAQPAGGK TKKKGMGMAG GLAVGAAAGV LGGLALAGGA SYVEHKIEDH
301: VTERVEEDMY RGGGYDDYGG DDDY

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.