Factsheet for VIT_16s0050g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g01310.t01	Wine grape	cytosol	96.27	96.27
VIT_16s0050g00850.t01	Wine grape	cytosol	72.01	67.48
Solyc06g036110.1.1	Tomato	cytosol, extracellular	52.61	56.85
PGSC0003DMT400076930	Potato	cytosol	55.6	55.19
CDX87149	Canola	cytosol	42.91	53.74
CDY16874	Canola	cytosol	42.91	52.51
HORVU6Hr1G020750.2	Barley	cytosol	51.87	49.64
KRH08884	Soybean	cytosol	47.39	49.61
GSMUA_Achr10P...	Banana	cytosol	39.93	49.08
Bra026474.1-P	Field mustard	cytosol	47.39	49.03
GSMUA_Achr11P...	Banana	cytosol	12.31	48.53
HORVU6Hr1G020740.1	Barley	cytosol	24.63	47.48
KRH38406	Soybean	nucleus	48.88	46.62
Os08t0562600-03	Rice	plastid	50.0	46.05
AT5G23950.2	Thale cress	cytosol	39.93	45.53
TraesCS6D01G104000.1	Wheat	cytosol	48.88	45.33
TraesCS6B01G143000.1	Wheat	cytosol	49.63	45.08
Os09t0571200-01	Rice	cytosol	48.13	44.48
Zm00001d031892_P001	Maize	cytosol	45.52	43.26
TraesCS6A01G115400.1	Wheat	cytosol	47.01	42.0
TraesCS7B01G436800.1	Wheat	cytosol	44.78	41.1
PGSC0003DMT400026228	Potato	cytosol	53.73	41.03
Solyc03g025340.1.1	Tomato	cytosol	52.99	40.69
TraesCS4D01G001900.1	Wheat	cytosol	48.51	40.12
EES15243	Sorghum	cytosol, peroxisome, plastid	42.91	39.66
TraesCS7A01G520000.1	Wheat	cytosol	46.27	39.62
TraesCS7B01G436400.1	Wheat	cytosol	47.39	39.32
Zm00001d019750_P001	Maize	cytosol	47.39	39.2
HORVU4Hr1G000850.1	Barley	cytosol	47.01	38.65
TraesCS7D01G509700.1	Wheat	cytosol	46.64	38.23
TraesCS4A01G312300.1	Wheat	cytosol	46.27	37.69
TraesCS4B01G001000.1	Wheat	cytosol	48.51	37.46
EER98534	Sorghum	cytosol	46.27	37.35
Zm00001d005315_P001	Maize	cytosol, extracellular	45.52	36.86
KRH08885	Soybean	cytosol	31.34	35.15
VIT_06s0004g06150.t01	Wine grape	cytosol	35.82	30.48
VIT_13s0019g03420.t01	Wine grape	cytosol	28.36	28.46

Protein Annotations

EntrezGene:100242355	wikigene:100242355	Gene3D:2.60.40.150	MapMan:35.2	EMBL:AM434003	EMBL:AM455196
InterPro:C2_dom	InterPro:C2_domain_sf	ProteinID:CAN69351	ProteinID:CAN69351.1	ProteinID:CAN78886	ProteinID:CAN78886.1
ProteinID:CCB47827	ProteinID:CCB47827.1	ncoils:Coil	UniProt:F6H6B6	EMBL:FN595243	InterPro:IPR000008
InterPro:IPR035892	EntrezGene:LOC100242355	wikigene:LOC100242355	PFAM:PF00168	PFscan:PS50004	PANTHER:PTHR32246
PANTHER:PTHR32246:SF52	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC64548	UniParc:UPI0001985BAE	ArrayExpress:VIT_16s0050g01300
EnsemblPlantsGene:VIT_16s0050g01300	EnsemblPlants:VIT_16s0050g01300.t01	unigene:Vvi.25250	RefSeq:XP_002275480	RefSeq:XP_002275480.1	SEG:seg

Description

No Description!

Coordinates

chr16:-:18165668..18166759

Molecular Weight (calculated)

29057.8 Da

IEP (calculated)

4.466

GRAVY (calculated)

-0.527

Length

268 amino acids

Sequence
(BLAST)

001: MAPRFELKLK ISSAKDLKNV NWCHGSLKPY AVVWVEPNAK CSTKVDHDGD TFPSWNETLH IPVPSSIDDS ALYLDIVHVK SDDEDDTKPM VGSARLFLRD
101: VVDDVGFGVE AFRTLELRRP SGRPQGKVDV EVSVRDLRHR APEPYYTAPY GVPPPPGTRG AAYADPPAYG APPPDPYYSN AAPYGHSPYG QPAYGYQEPT
201: YGYGQGSYGQ TVVVEEKKKK SGMGMGTGLA VGAVAGVLGG LAIAEGVDAL EDNIAEDVEE RIEDEEED

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.