Factsheet for VIT_16s0050g00850.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0050g01310.t01	Wine grape	cytosol	67.83	72.39
VIT_16s0050g01300.t01	Wine grape	cytosol	67.48	72.01
GSMUA_Achr11P...	Banana	cytosol	15.04	63.24
Solyc06g036110.1.1	Tomato	cytosol, extracellular	47.9	55.24
PGSC0003DMT400076930	Potato	cytosol	52.1	55.19
CDX87149	Canola	cytosol	40.56	54.21
GSMUA_Achr10P...	Banana	cytosol	39.86	52.29
CDY16874	Canola	cytosol	39.86	52.05
HORVU6Hr1G020750.2	Barley	cytosol	48.95	50.0
KRH38406	Soybean	nucleus	48.95	49.82
HORVU6Hr1G020740.1	Barley	cytosol	24.13	49.64
Bra026474.1-P	Field mustard	cytosol	44.41	49.03
KRH08884	Soybean	cytosol	43.71	48.83
TraesCS6B01G143000.1	Wheat	cytosol	47.55	46.1
TraesCS6D01G104000.1	Wheat	cytosol	46.5	46.02
Zm00001d031892_P001	Maize	cytosol	44.76	45.39
AT5G23950.2	Thale cress	cytosol	37.06	45.11
Os08t0562600-03	Rice	plastid	45.8	45.02
Os09t0571200-01	Rice	cytosol	44.76	44.14
TraesCS6A01G115400.1	Wheat	cytosol	44.76	42.67
TraesCS7B01G436800.1	Wheat	cytosol	42.66	41.78
PGSC0003DMT400026228	Potato	cytosol	50.7	41.31
Solyc03g025340.1.1	Tomato	cytosol	50.35	41.26
TraesCS7A01G520000.1	Wheat	cytosol	44.41	40.58
EES15243	Sorghum	cytosol, peroxisome, plastid	40.91	40.34
TraesCS7B01G436400.1	Wheat	cytosol	44.06	39.01
Zm00001d019750_P001	Maize	cytosol	44.06	38.89
EER98534	Sorghum	cytosol	45.1	38.86
TraesCS4D01G001900.1	Wheat	cytosol	43.71	38.58
KRH08885	Soybean	cytosol	32.17	38.49
Zm00001d005315_P001	Maize	cytosol, extracellular	44.06	38.07
HORVU4Hr1G000850.1	Barley	cytosol	42.66	37.42
TraesCS7D01G509700.1	Wheat	cytosol	42.66	37.31
TraesCS4B01G001000.1	Wheat	cytosol	44.41	36.6
TraesCS4A01G312300.1	Wheat	cytosol	41.96	36.47
VIT_06s0004g06150.t01	Wine grape	cytosol	35.31	32.06
VIT_13s0019g03420.t01	Wine grape	cytosol	29.37	31.46

Protein Annotations

EntrezGene:100249100	wikigene:100249100	Gene3D:2.60.40.150	MapMan:35.2	EMBL:AM486447	InterPro:C2_dom
InterPro:C2_domain_sf	ProteinID:CAN68775	ProteinID:CAN68775.1	ProteinID:CCB47854	ProteinID:CCB47854.1	UniProt:F6H6J3
EMBL:FN595243	InterPro:IPR000008	InterPro:IPR035892	EntrezGene:LOC100249100	wikigene:LOC100249100	PFAM:PF00168
PFscan:PS50004	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	SMART:SM00239	SUPFAM:SSF49562	TIGR:TC65288
UniParc:UPI0001985B51	ArrayExpress:VIT_16s0050g00850	EnsemblPlantsGene:VIT_16s0050g00850	EnsemblPlants:VIT_16s0050g00850.t01	unigene:Vvi.12480	RefSeq:XP_002271267
RefSeq:XP_002271267.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:17795679..17796720

Molecular Weight (calculated)

30780.8 Da

IEP (calculated)

4.417

GRAVY (calculated)

-0.524

Length

286 amino acids

Sequence
(BLAST)

001: MAGRYEIELI ISSAKDLKNV NWRHGSLKPY VVVWVDPAAK LSTKVDNDGD TFPCWNETLL IPVPSRIEDS TLYLDVVHLK ADDEDDTKPV VGSARLFLRD
101: VVDDVGFGAQ AIRTLELRRP SGRPHGKVEV KVSVRDPRYR APGSAYSPPY GVPPPAGTRG AGYAASPAYA TPYGAPPPDP YYSNAPPYGQ DPYRQPAYGQ
201: PQPRYGDPAY GQGPYAQGPY GQTVVEQPQK KSGMGMGTGL AVGAVAGVLG GLAISEGVDA LEDHIADDVE DRIDGDDLED YDGDDF

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.