Factsheet for Bra026474.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16874	Canola	cytosol	76.83	90.87
CDX87149	Canola	cytosol	71.43	86.45
AT5G23950.2	Thale cress	cytosol	58.69	64.68
Solyc06g036110.1.1	Tomato	cytosol, extracellular	51.35	53.63
KRH38406	Soybean	nucleus	55.6	51.25
PGSC0003DMT400076930	Potato	cytosol	52.9	50.74
HORVU6Hr1G020740.1	Barley	cytosol	26.64	49.64
VIT_16s0050g01310.t01	Wine grape	cytosol	51.35	49.63
KRH08884	Soybean	cytosol	48.65	49.22
VIT_16s0050g01300.t01	Wine grape	cytosol	49.03	47.39
GSMUA_Achr10P...	Banana	cytosol	39.38	46.79
GSMUA_Achr11P...	Banana	cytosol	11.97	45.59
Zm00001d031892_P001	Maize	cytosol	48.65	44.68
VIT_16s0050g00850.t01	Wine grape	cytosol	49.03	44.41
Os08t0562600-03	Rice	plastid	49.42	43.99
HORVU6Hr1G020750.2	Barley	cytosol	47.1	43.57
TraesCS6D01G104000.1	Wheat	cytosol	47.88	42.91
TraesCS6A01G115400.1	Wheat	cytosol	49.03	42.33
Os09t0571200-01	Rice	cytosol	45.56	40.69
TraesCS6B01G143000.1	Wheat	cytosol	46.33	40.68
KRH08885	Soybean	cytosol	37.45	40.59
EES15243	Sorghum	cytosol, peroxisome, plastid	45.17	40.34
PGSC0003DMT400026228	Potato	cytosol	54.44	40.17
Solyc03g025340.1.1	Tomato	cytosol	53.28	39.54
TraesCS7B01G436800.1	Wheat	cytosol	44.4	39.38
TraesCS4D01G001900.1	Wheat	cytosol	48.65	38.89
TraesCS7A01G520000.1	Wheat	cytosol	46.33	38.34
HORVU4Hr1G000850.1	Barley	cytosol	47.88	38.04
Zm00001d019750_P001	Maize	cytosol	47.49	37.96
Zm00001d005315_P001	Maize	cytosol, extracellular	47.1	36.86
TraesCS7B01G436400.1	Wheat	cytosol	45.56	36.53
EER98534	Sorghum	cytosol	46.33	36.14
TraesCS7D01G509700.1	Wheat	cytosol	45.56	36.09
TraesCS4A01G312300.1	Wheat	cytosol	45.56	35.87
TraesCS4B01G001000.1	Wheat	cytosol	47.49	35.45
Bra015573.1-P	Field mustard	cytosol	27.8	22.57
Bra031570.1-P	Field mustard	cytosol	27.41	20.58

Protein Annotations

EnsemblPlants:Bra026474.1	EnsemblPlants:Bra026474.1-P	EnsemblPlantsGene:Bra026474	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF52	PFAM:PF00168	SEG:seg
SMART:SM00239	SUPFAM:SSF49562	TMHMM:TMhelix	UniParc:UPI0002546FB7	UniProt:M4ECG5	MapMan:35.2

Description

AT5G23950 (E=8e-061) | C2 domain-containing protein

Coordinates

chrA01:+:9085370..9086149

Molecular Weight (calculated)

28112.3 Da

IEP (calculated)

4.287

GRAVY (calculated)

-0.684

Length

259 amino acids

Sequence
(BLAST)

001: MSSRGREVEV TISSAKNIKN VNWRNGPNKP YAVVWIDPKY KFSTRVDEED DTCPSWNQTF VIPLPPGNDD YDDDKVFIDV VHAGGEENTK PLIGSAHLSL
101: RDVIDDVGFG VPVEKTLKLK RPSGRPHGKL DVTVTVREPR YQPSPGSYHA PPYGYTHAPP QPVYGEPYTH APPQPVYDYP YAPPQPYGTA SYGQSGYTAE
201: KEKGSKFGGM GTGLAVGAVA GVLGGVALAE GLDEVEDDIA EEAAEDVEDD DAGENDEDF

Best Arabidopsis Sequence Match ( AT5G23950.2 )
(BLAST)

001: MLFSSCKIIF QYTLKEMSSH GREVEVTISS AKDIKNVNWR NGPNKPYAVV WIDPKFKSST RVDEDGNTCT TWNETFVIAL PPANDDDDKV YINIVHAGRE
101: ENTKPLIGSA HLSLRDVIDD VGFGVPFMKT LKLKRPSGRP QGKLDVTVTV RETPGSNYAL PYGDPYAPEK GSKFGGMGTG LAVGAVAGVL GGVALAEGLE
201: AVEGDEDDDD DDDAAAAAAA DDDDDDDDDD DDDDE

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.