Factsheet for Bra015573.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra036832.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	Bra036832.1-P	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06697	Canola	cytosol	87.77	87.77
AT1G07310.1	Thale cress	cytosol	64.89	58.81
Bra031570.1-P	Field mustard	cytosol	63.01	58.26
KRH31112	Soybean	cytosol	27.9	37.24
VIT_06s0004g06150.t01	Wine grape	cytosol	36.68	37.14
GSMUA_Achr10P...	Banana	cytosol	38.24	36.97
PGSC0003DMT400015573	Potato	cytosol	36.05	35.6
Solyc09g082950.1.1	Tomato	cytosol	35.74	35.19
KRG97773	Soybean	cytosol	32.6	34.78
Os01t0853800-01	Rice	plastid	35.42	34.56
Zm00001d012336_P001	Maize	mitochondrion	34.17	33.33
TraesCS3A01G367800.1	Wheat	plastid	34.17	29.7
TraesCS3B01G399500.1	Wheat	plastid	33.86	29.35
HORVU3Hr1G085130.1	Barley	plastid	33.54	29.08
KXG33717	Sorghum	mitochondrion	35.11	29.02
TraesCS3D01G360800.1	Wheat	plastid	34.17	28.61
Bra026474.1-P	Field mustard	cytosol	22.57	27.8

Protein Annotations

EnsemblPlants:Bra015573.1	EnsemblPlants:Bra015573.1-P	EnsemblPlantsGene:Bra015573	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF53	PFAM:PF00168	PFscan:PS50004
SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0002544D85	UniProt:M4DGE9	MapMan:35.2

Description

AT1G07310 (E=1e-120) | C2 domain-containing protein

Coordinates

chrA10:+:950692..951651

Molecular Weight (calculated)

35406.5 Da

IEP (calculated)

8.997

GRAVY (calculated)

-0.752

Length

319 amino acids

Sequence
(BLAST)

001: MASSSETLDL VVTVVSAKHL KNVNWRNGDR KPYVVLSLDS DPRVSTRSDD SAKPVWNERI TLPLTRSVHE SVLNVEIFHS DAAKPLVGSV RFPLVRLVDS
101: EGAMVPESIS SLELLRPSGR PQGKIRLKLA IKERPIPPPQ RPQSHPRDYY SAPQGNHYYS PSPPPPPPPA PITSPSPHRD YREFSPSPSP YPFTDHYYSG
201: FYYPPPPPRS MYDRASNYGQ PSAPVDLPLA PPRFPQPSGP SAPVEAFQMN EYKPQAGSRL SSYGVPGGPS APVDYSPYDH RQLQKTMGGL SLEEERGAAE
301: SDFGARPSFS YGREYRREC

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.