Factsheet for Zm00001d012336_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d001952_P001
Zm00001d026536_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	Zm00001d001952_P001	AT3G51180.1	21798944
AT1G07310.1	Zm00001d026536_P002	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0853800-01	Rice	plastid	73.39	73.39
KXG33717	Sorghum	mitochondrion	84.1	71.24
HORVU3Hr1G085130.1	Barley	plastid	75.84	67.39
TraesCS3B01G399500.1	Wheat	plastid	74.92	66.58
TraesCS3A01G367800.1	Wheat	plastid	73.7	65.67
TraesCS3D01G360800.1	Wheat	plastid	74.92	64.3
KRH31112	Soybean	cytosol	35.78	48.95
GSMUA_Achr10P...	Banana	cytosol	48.93	48.48
KRG97773	Soybean	cytosol	40.67	44.48
VIT_06s0004g06150.t01	Wine grape	cytosol	41.9	43.49
Solyc09g082950.1.1	Tomato	cytosol	40.98	41.36
PGSC0003DMT400015573	Potato	cytosol	40.37	40.87
VIT_13s0019g03420.t01	Wine grape	cytosol	33.33	40.82
Zm00001d031892_P001	Maize	cytosol	34.56	40.07
CDY10267	Canola	cytosol	33.95	34.91
CDY06697	Canola	cytosol	33.95	34.8
Bra015573.1-P	Field mustard	cytosol	33.33	34.17
CDY09924	Canola	cytosol	34.56	34.04
Zm00001d005315_P001	Maize	cytosol, extracellular	34.25	33.84
AT1G07310.1	Thale cress	cytosol	35.47	32.95
Zm00001d019750_P001	Maize	cytosol	32.42	32.72
CDY06250	Canola	cytosol	33.64	31.88
Bra031570.1-P	Field mustard	cytosol	33.64	31.88

Protein Annotations

EMBL:BT036279	EMBL:EU962983	EnsemblPlants:Zm00001d012336_P001	EnsemblPlants:Zm00001d012336_T001	EnsemblPlantsGene:Zm00001d012336	EntrezGene:100193897
Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246
PANTHER:PTHR32246:SF19	PFAM:PF00168	ProteinID:AQK99356.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562
UniParc:UPI00017B6EF8	UniProt:B4FGP1	MapMan:35.2	:	:	:

Description

Calcium-dependent lipid-binding (CaLB domain) family protein

Coordinates

chr8:-:172697736..172698849

Molecular Weight (calculated)

35195.3 Da

IEP (calculated)

9.206

GRAVY (calculated)

-0.711

Length

327 amino acids

Sequence
(BLAST)

001: MASPSPSSPL HPHQHPPPPN VHHQFQSLPP SMPPPPPSTA LPKALDLEVT VVCGKHLKNV NWRRGDLRAY VVVYLDPSRR AATRPDDGGG CKPTWNERLV
101: LPLPPHLSPH DPSILLSLDV FHSKPSDSPK PLVGSARSPL RDLLFPANPN PSHDPAASAL VSLPLLRPSG RPQGKIRIRV AIRERSPPPP EPQYPPPSSS
201: PYYFPPPPPA YSAPPQYGSD QYYRPSGYYS APAPPPHPYE YTGGPSAPVD YNRQYEQRGR TGAAGSGSGN GRYGAGTGLA VGAVAGALGG LAIDEAVKYK
301: EDKGAERVEE KVVPAGRDDY SEYRGDY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.