Factsheet for GSMUA_Achr10P13840_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P19920_001
GSMUA_Achr3P11230_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	GSMUA_Achr1P19920_001	AT3G51180.1	21798944
AT1G07310.1	GSMUA_Achr3P11230_001	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31112	Soybean	cytosol	40.61	56.07
VIT_06s0004g06150.t01	Wine grape	cytosol	52.42	54.92
KRG97773	Soybean	cytosol	46.06	50.84
VIT_13s0019g03420.t01	Wine grape	cytosol	40.0	49.44
PGSC0003DMT400015573	Potato	cytosol	48.18	49.23
Zm00001d012336_P001	Maize	mitochondrion	48.48	48.93
Solyc09g082950.1.1	Tomato	cytosol	47.88	48.77
GSMUA_Achr10P...	Banana	cytosol	31.21	47.25
Os01t0853800-01	Rice	plastid	46.36	46.79
GSMUA_Achr11P...	Banana	cytosol	9.39	45.59
TraesCS3A01G367800.1	Wheat	plastid	48.48	43.6
TraesCS3B01G399500.1	Wheat	plastid	48.48	43.48
HORVU3Hr1G085130.1	Barley	plastid	48.18	43.21
KXG33717	Sorghum	mitochondrion	48.48	41.45
TraesCS3D01G360800.1	Wheat	plastid	47.58	41.21
CDY10267	Canola	cytosol	38.18	39.62
CDY06697	Canola	cytosol	37.58	38.87
Bra015573.1-P	Field mustard	cytosol	36.97	38.24
AT1G07310.1	Thale cress	cytosol	40.61	38.07
CDY09924	Canola	cytosol	38.18	37.95
Bra031570.1-P	Field mustard	cytosol	36.67	35.07
CDY06250	Canola	cytosol	35.76	34.2

Protein Annotations

EnsemblPlants:GSMUA_Achr10P13840_001	EnsemblPlants:GSMUA_Achr10T13840_001	EnsemblPlantsGene:GSMUA_Achr10G13840_001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf
InterPro:IPR000008	InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF19	PFAM:PF00168	PFscan:PS50004
SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI000295067E	UniProt:M0RI10	MapMan:35.2

Description

Putative C2 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G13840_001]

Coordinates

chr10:-:22307575..22308886

Molecular Weight (calculated)

35655.6 Da

IEP (calculated)

7.068

GRAVY (calculated)

-0.659

Length

330 amino acids

Sequence
(BLAST)

001: MDSPQRPPPP SPSPRPLDLE VTVVSAKHLK NVNWRNGDLK PYVVAYLDPD CRVATKPDDA GSIRPVWNER LALPLPLPSS ETLLFLTLDV FHSKPSETPK
101: PLVGTARSPV KDLLDPDAFT VGGGVDGSPS PIRTLELRRP SGRPQGKIRI KLAIRERPCP PPDLHPHPHH HFPPPPPSSS YYYSSNAPPF PSPSPPPPHS
201: ARDYRTFTPP YSDPYTSGYY SPAPYYSAPT APAPVPAPAP AQTHTYYDQT SGYGGPSAPT GYSSGYSAYD HKPKGGRMGA ATGLAVGAVA GALGGLALEE
301: GLKYEEEKIA ERVESDVCAR DDYSDYRADY

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.