CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	CDX73744	AT3G51180.1	21798944
AT1G07310.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031570.1-P	Field mustard	cytosol	97.39	97.39
CDY09924	Canola	cytosol	81.74	84.94
CDY06697	Canola	cytosol	61.16	66.14
CDY10267	Canola	cytosol	59.42	64.47
AT1G07310.1	Thale cress	cytosol	62.03	60.8
KRH31112	Soybean	cytosol	26.96	38.91
KRG97773	Soybean	cytosol	31.59	36.45
VIT_06s0004g06150.t01	Wine grape	cytosol	32.75	35.87
GSMUA_Achr10P...	Banana	cytosol	34.2	35.76
Os01t0853800-01	Rice	plastid	32.17	33.95
Zm00001d012336_P001	Maize	mitochondrion	31.88	33.64
PGSC0003DMT400015573	Potato	cytosol	31.3	33.44
Solyc09g082950.1.1	Tomato	cytosol	31.01	33.02
KXG33717	Sorghum	mitochondrion	32.46	29.02
TraesCS3A01G367800.1	Wheat	plastid	30.72	28.88
HORVU3Hr1G085130.1	Barley	plastid	30.14	28.26
TraesCS3B01G399500.1	Wheat	plastid	30.14	28.26
TraesCS3D01G360800.1	Wheat	plastid	30.43	27.56
CDX87149	Canola	cytosol	16.52	26.64
CDY16874	Canola	cytosol	16.81	26.48

Protein Annotations

EnsemblPlants:CDY06250	EnsemblPlantsGene:GSBRNA2T00122167001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF53	PFAM:PF00168	PFscan:PS50004	ProteinID:CDY06250
ProteinID:CDY06250.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EF2AF2	MapMan:35.2

Description

BnaA09g49530D

Coordinates

chrLK031968:-:475982..477277

Molecular Weight (calculated)

38595.9 Da

IEP (calculated)

7.209

GRAVY (calculated)

-0.725

Length

345 amino acids

Sequence
(BLAST)

001: MASSSSEPLE LIVNVLSAKH LKNVNWRNGD LKPYVVLYLD SDHRLSTRSD DSTKPVWNER ITLPLTRSVH ESVLSVEIFH SNSSDLAKAL VGSVRFPLVR
101: LVDYEGAFNS LELIRPSGRT QGKIRLKLEI KERPIPPQNY YSAPNGLQPI QAQNFYSAPE GNRYYSPPPA PITSPSPQRD YRDFSPYPFT DHYYSRFYYP
201: PPPPPPRSMY DRASNYSLPR VPSAPVDHNP LPPRFPNYPP PPSGPPSAPV DAFPVNDAPS APVDAFPANE YKPQDPPVSS RFSSYGVPSG PSAPVDYSPY
301: DHRQLQKTMG GLSLEEERAV AAERSESEFG AGPSNSYCRD YRREC

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.