CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73744
CDX77980

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07310.1	CDX73744	AT3G51180.1	21798944
AT1G07310.1	CDX77980	AT3G51180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015573.1-P	Field mustard	cytosol	87.77	87.77
CDY10267	Canola	cytosol	83.7	83.96
CDY09924	Canola	cytosol	64.58	62.05
CDY06250	Canola	cytosol	66.14	61.16
AT1G07310.1	Thale cress	cytosol	64.58	58.52
KRH31112	Soybean	cytosol	29.15	38.91
GSMUA_Achr10P...	Banana	cytosol	38.87	37.58
VIT_06s0004g06150.t01	Wine grape	cytosol	36.05	36.51
PGSC0003DMT400015573	Potato	cytosol	36.05	35.6
KRG97773	Soybean	cytosol	33.23	35.45
Solyc09g082950.1.1	Tomato	cytosol	35.42	34.88
Os01t0853800-01	Rice	plastid	35.74	34.86
Zm00001d012336_P001	Maize	mitochondrion	34.8	33.95
TraesCS3A01G367800.1	Wheat	plastid	34.8	30.25
TraesCS3B01G399500.1	Wheat	plastid	34.8	30.16
HORVU3Hr1G085130.1	Barley	plastid	34.48	29.89
CDX87149	Canola	cytosol	19.75	29.44
TraesCS3D01G360800.1	Wheat	plastid	35.11	29.4
KXG33717	Sorghum	mitochondrion	35.42	29.27
CDY16874	Canola	cytosol	19.75	28.77

Protein Annotations

EnsemblPlants:CDY06697	EnsemblPlantsGene:GSBRNA2T00122874001	Gene3D:2.60.40.150	InterPro:C2_dom	InterPro:C2_domain_sf	InterPro:IPR000008
InterPro:IPR035892	PANTHER:PTHR32246	PANTHER:PTHR32246:SF53	PFAM:PF00168	PFscan:PS50004	ProteinID:CDY06697
ProteinID:CDY06697.1	SEG:seg	SMART:SM00239	SUPFAM:SSF49562	UniParc:UPI0004EDD57F	MapMan:35.2

Description

BnaA10g04760D

Coordinates

chrLK031972:-:339024..340385

Molecular Weight (calculated)

35470.5 Da

IEP (calculated)

8.710

GRAVY (calculated)

-0.734

Length

319 amino acids

Sequence
(BLAST)

001: MASSSETLDL VVTVVSAKHL KNVNWRNGDL KPYVVLYLDS DHRVSTRSDD SAKPVWNERI TLPLTRSVHE SVLNVEIFHS DAAKPLVGSV RFPLVRLVDS
101: EGAMVPESIS SLELLRPSGR PQGKIRLKLA IKERPIPPPQ RPQSQPRDYY SAPQGNHYYS PSPPPPPPPA PITSPSPHRD YREFSPSPSP YPFTDHYYSG
201: FYYPPPPPRS MYDRASNYGQ PSAPVDLPLA PPRFPQPSGP SAPVEAFQMN EYKPQAGSRL SSYGVPGGPS APVDYSPYDH RQLQKTMGGL SLEEERGAAE
301: SDFGARPSFS YGREYRREC

Best Arabidopsis Sequence Match ( AT1G07310.1 )
(BLAST)

001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC

Arabidopsis Description

Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LNV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.